PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | KHN26845.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 105aa MW: 11652.1 Da PI: 4.9199 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 42.5 | 1.9e-13 | 1 | 40 | 61 | 100 |
DUF260 61 lvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +vyeA+ar+rdPvyG+vg i++lqqq++ l+++lal+++e KHN26845.1 1 MVYEANARVRDPVYGCVGAISSLQQQVDVLQTQLALAQAE 40 69*********************************99986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03195 | 5.8E-11 | 1 | 38 | IPR004883 | Lateral organ boundaries, LOB |
PROSITE profile | PS50891 | 9.476 | 1 | 41 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0004088 | Molecular Function | carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 105 aa Download sequence Send to blast |
MVYEANARVR DPVYGCVGAI SSLQQQVDVL QTQLALAQAE VVHMRMRQFS PPSEQQQPSV 60 LPEASNSSSE NLYHSSRLLS SQTKSVFGMD MVVDQANMGQ SLWSY |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | KHN26845.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT097864 | 1e-150 | BT097864.1 Soybean clone JCVI-FLGm-16M12 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_028246177.1 | 6e-71 | LOB domain-containing protein 4-like | ||||
Swissprot | Q9SHE9 | 1e-19 | LBD4_ARATH; LOB domain-containing protein 4 | ||||
TrEMBL | A0A445JFU0 | 1e-69 | A0A445JFU0_GLYSO; LOB domain-containing protein 4 | ||||
STRING | GLYMA08G17990.1 | 7e-70 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1334 | 34 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G31320.1 | 2e-12 | LOB domain-containing protein 4 |
Publications ? help Back to Top | |||
---|---|---|---|
|