PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

FAR1

Protein Properties

Length: 842aa MW: 96166.3 Da PI: 7.2223

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN26435.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	85.8	6.7e-27	89	191	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk............tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnH 87 +fY+eYA+++GF++ +++s++sk+++e+++++f Cs++g+++e +k+ +e++ +r+ ++t+Cka+++vk+++dgkw+++++++eHnH KHN26435.1 89 SFYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYGTKREYDKSfnrprarqnkqdSENSTGRRSCSKTDCKASMHVKRRSDGKWVIHSFVKEHNH 187 5*****************************************9999999887665556669999***************************** PP FAR1 88 elap 91 el p KHN26435.1 188 ELLP 191 *975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	9.3E-25	89	191	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.2E-29	288	380	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.557	568	604	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	5.7E-5	576	602	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	3.7E-6	579	606	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 842 aa Download sequence Send to blast
MDIDLRLPSG EHDKEDEETT TIDNMLDSEE KLHNGGIDGR NIVDAGIEVH ALNGGDLNSP 60 TVDIVMFKED TNLEPLSGME FESHGEAYSF YQEYARSMGF NTAIQNSRRS KTSREFIDAK 120 FACSRYGTKR EYDKSFNRPR ARQNKQDSEN STGRRSCSKT DCKASMHVKR RSDGKWVIHS 180 FVKEHNHELL PAQAVSEQTR RMYAAMARQF AEYKTVVGLK NEKNPFDKGR NLGLESGEAK 240 LMLDFFIQMQ NMNSNFFYAV DLGEDQRLKN LLWIDAKSRH DYINFCDVVS FDTTYVRNKY 300 KMPLAFFVGV NQHYQFTLLG CALISDESAA TFSWLFWTWL KGVGGQVPKV IITDHDKTLK 360 SVISDMFPNS SHCVCLWHIL GKVSENLSPV IKKHENFMAK FEKCIYRSLT SDDFEKRWWK 420 IVDKFELRED ECMQSLYEDR KLWAPTFMKD VFLGGMSTIQ RSESVNSFFD KYVHKKTSVQ 480 DFVKQYEAIL QDRYEEEAKA DSDTWNKVAT LKTPSPLEKS VAGIFTHAVF KKIQAEVIGA 540 VACHPKADRH DDTTIVHRVH DMETNKDFFV VVNQVKSELS CICRLFEYRG YLCRHALIVL 600 QYSGQSVFPS QYILKRWTKD AKVRNIIGEE SEHVLTRVQR YNDLCQRALK LIEEGSLSQE 660 SYGIAFHALH EAHKSCVSVN NSSKSPTEAG TSGAHGQLST EDDTQSRNMS KSNKKKNPTK 720 KKKVNSEAEV ITVGALDNLQ QMDKFSTRAV TLEGYYGTQQ SVQGMLNLMG PTRDDYYGNQ 780 QTLQGLGPIS SIPTSHDGYY GTHQGMPGLA QLDFLRTGFT YGIRDDTNVR ATQLHEDPSR 840 HA

Sequence ? help Back to Top

Protein Sequence Length: 842 aa Download sequence Send to blast

MDIDLRLPSG EHDKEDEETT TIDNMLDSEE KLHNGGIDGR NIVDAGIEVH ALNGGDLNSP  60
TVDIVMFKED TNLEPLSGME FESHGEAYSF YQEYARSMGF NTAIQNSRRS KTSREFIDAK  120
FACSRYGTKR EYDKSFNRPR ARQNKQDSEN STGRRSCSKT DCKASMHVKR RSDGKWVIHS  180
FVKEHNHELL PAQAVSEQTR RMYAAMARQF AEYKTVVGLK NEKNPFDKGR NLGLESGEAK  240
LMLDFFIQMQ NMNSNFFYAV DLGEDQRLKN LLWIDAKSRH DYINFCDVVS FDTTYVRNKY  300
KMPLAFFVGV NQHYQFTLLG CALISDESAA TFSWLFWTWL KGVGGQVPKV IITDHDKTLK  360
SVISDMFPNS SHCVCLWHIL GKVSENLSPV IKKHENFMAK FEKCIYRSLT SDDFEKRWWK  420
IVDKFELRED ECMQSLYEDR KLWAPTFMKD VFLGGMSTIQ RSESVNSFFD KYVHKKTSVQ  480
DFVKQYEAIL QDRYEEEAKA DSDTWNKVAT LKTPSPLEKS VAGIFTHAVF KKIQAEVIGA  540
VACHPKADRH DDTTIVHRVH DMETNKDFFV VVNQVKSELS CICRLFEYRG YLCRHALIVL  600
QYSGQSVFPS QYILKRWTKD AKVRNIIGEE SEHVLTRVQR YNDLCQRALK LIEEGSLSQE  660
SYGIAFHALH EAHKSCVSVN NSSKSPTEAG TSGAHGQLST EDDTQSRNMS KSNKKKNPTK  720
KKKVNSEAEV ITVGALDNLQ QMDKFSTRAV TLEGYYGTQQ SVQGMLNLMG PTRDDYYGNQ  780
QTLQGLGPIS SIPTSHDGYY GTHQGMPGLA QLDFLRTGFT YGIRDDTNVR ATQLHEDPSR  840
HA

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CACGCGC-3'. Activates the expression of FHY1 and FHL involved in light responses. When associated with PHYA, protects it from being recognized and degraded by the COP1/SPA complex. Positive regulator of chlorophyll biosynthesis via the activation of HEMB1 gene expression. {ECO:0000269\|PubMed:11889039, ECO:0000269\|PubMed:12753585, ECO:0000269\|PubMed:17012604, ECO:0000269\|PubMed:18033885, ECO:0000269\|PubMed:18715961, ECO:0000269\|PubMed:22634759}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN26435.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated after exposure to far-red light. Subject to a negative feedback regulation by PHYA signaling. Up-regulated by white light. {ECO:0000269\|PubMed:11889039, ECO:0000269\|PubMed:18033885, ECO:0000269\|PubMed:22634759}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM587701	0.0	KM587701.1 Glycine max clone GmFHY3 FHY3 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003527537.1	0.0	protein FAR-RED ELONGATED HYPOCOTYL 3
Refseq	XP_028238369.1	0.0	protein FAR-RED ELONGATED HYPOCOTYL 3-like
Swissprot	Q9LIE5	0.0	FHY3_ARATH; Protein FAR-RED ELONGATED HYPOCOTYL 3
TrEMBL	A0A0B2QY08	0.0	A0A0B2QY08_GLYSO; Protein FAR-RED ELONGATED HYPOCOTYL 3
TrEMBL	I1KFM9	0.0	I1KFM9_SOYBN; Uncharacterized protein
STRING	GLYMA06G47210.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22170.2	0.0	far-red elongated hypocotyls 3

Publications ? help Back to Top
Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933] Chang N,Gao Y,Zhao L,Liu X,Gao H Arabidopsis FHY3/CPD45 regulates far-red light signaling and chloroplast division in parallel. Sci Rep, 2015. 5: p. 9612 [PMID:25872642] Wang C, et al. SCAB3 Is Required for Reorganization of Actin Filaments during Light Quality Changes. J Genet Genomics, 2015. 42(4): p. 161-8 [PMID:25953354] Wang W, et al. A pair of light signaling factors FHY3 and FAR1 regulates plant immunity by modulating chlorophyll biosynthesis. J Integr Plant Biol, 2016. 58(1): p. 91-103 [PMID:25989254] Ma L, et al. Arabidopsis FHY3 and FAR1 Regulate Light-Induced myo-Inositol Biosynthesis and Oxidative Stress Responses by Transcriptional Activation of MIPS1. Mol Plant, 2016. 9(4): p. 541-57 [PMID:26714049] Siddiqui H,Khan S,Rhodes BM,Devlin PF FHY3 and FAR1 Act Downstream of Light Stable Phytochromes. Front Plant Sci, 2016. 7: p. 175 [PMID:26941752] Li D, et al. FAR-RED ELONGATED HYPOCOTYL3 activates SEPALLATA2 but inhibits CLAVATA3 to regulate meristem determinacy and maintenance in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(33): p. 9375-80 [PMID:27469166] Liu L,Li B,Liu X FAR-RED ELONGATED HYPOCOTYL3 promotes floral meristem determinacy in Arabidopsis. Plant Signal Behav, 2016. 11(10): p. e1238545 [PMID:27660915] Ma L,Xue N,Fu X,Zhang H,Li G Arabidopsis thaliana FAR-RED ELONGATED HYPOCOTYLS3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1) modulate starch synthesis in response to light and sugar. New Phytol., 2017. 213(4): p. 1682-1696 [PMID:27859295] Liu Y, et al. Light and Ethylene Coordinately Regulate the Phosphate Starvation Response through Transcriptional Regulation of PHOSPHATE STARVATION RESPONSE1. Plant Cell, 2017. 29(9): p. 2269-2284 [PMID:28842534] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]