PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN26160.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family M-type_MADS
Protein Properties Length: 250aa    MW: 28757.1 Da    PI: 9.9551
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN26160.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF84.85.2e-271059251
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                ri+n++ rqvtfskRrng+lKKA+EL +LCdaev v+ifsstgkly+++s
  KHN26160.1 10 RIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVMIFSSTGKLYDFAS 59
                8***********************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.4E-39160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.357161IPR002100Transcription factor, MADS-box
CDDcd002656.24E-39278No hitNo description
SuperFamilySSF554553.53E-28285IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-27323IPR002100Transcription factor, MADS-box
PfamPF003198.4E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-273859IPR002100Transcription factor, MADS-box
PROSITE profilePS5099417.04256200IPR001584Integrase, catalytic core
SuperFamilySSF530981.02E-3758198IPR012337Ribonuclease H-like domain
Gene3DG3DSA:3.30.420.102.7E-2762201IPR012337Ribonuclease H-like domain
PfamPF006658.6E-1065154IPR001584Integrase, catalytic core
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0015074Biological ProcessDNA integration
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MGRGKIVIRR IDNSTSRQVT FSKRRNGLLK KAKELAILCD AEVGVMIFSS TGKLYDFASS  60
RGLEAVLVVV DRLSKYSHFL LLKHPYTAKS VAELFVREVV RLHGIPMSII SDRDPIFVSH  120
FWSELFKLQG TQLNMSSAYH PETDGQTEVT NRCLDSYLRC FASEQPKTWS YWIPWAEFWY  180
NTTFHVSIGR TPFEVVYGRQ PPSIIRFLSN ETKVAAVALE LSERDEALNQ LKAHLLRTQQ  240
QNIQIRREGK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A8e-17194184MEF2C
5f28_B8e-17194184MEF2C
5f28_C8e-17194184MEF2C
5f28_D8e-17194184MEF2C
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN26160.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2351110.0AC235111.1 Glycine max strain Williams 82 clone GM_WBa0018M05, complete sequence.
GenBankAC2351350.0AC235135.1 Glycine max strain Williams 82 clone GM_WBa0059L08, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017423745.11e-86PREDICTED: uncharacterized protein LOC108332955
TrEMBLA0A392M6M01e-113A0A392M6M0_9FABA; Uncharacterized protein (Fragment)
STRINGXP_004150327.16e-71(Cucumis sativus)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14210.14e-36AGAMOUS-like 44
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]