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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN26140.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MYB_related | ||||||||
Protein Properties | Length: 249aa MW: 27997.3 Da PI: 4.7854 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 28.9 | 2.7e-09 | 201 | 229 | 1 | 29 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIar 29 r +W++eEd++l av+++G g+W+t a+ KHN26140.1 201 REPWSEEEDLQLRAAVRRWGEGNWATMAK 229 789***********************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 4.74E-8 | 195 | 242 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 9.774 | 196 | 249 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-10 | 196 | 242 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.1E-7 | 201 | 229 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 1.56E-8 | 203 | 243 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MKKTSNVFFS EDEAAVLLQR YNAQTILTLL QELANYPDSK FDWDDLVAKT STGISNAREY 60 QMLWRHLAYG HSFDENSDLD NQPLDDDSDL ECEREALPRP NKEIAAEASA CVQVMMTSFK 120 LNESTPTSSV IQAPLTINVP VFRSSRIANM ESSQSSSSGM QETNIVFPVT VKRQALPNVP 180 STRAVETRGS GSGYTSMKKK REPWSEEEDL QLRAAVRRWG EGNWATMAKS DDFPIQRSTT 240 QLSKVFLQP |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN26140.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC235187 | 0.0 | AC235187.1 Glycine max strain Williams 82 clone GM_WBb0010C08, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003518263.2 | 0.0 | telomeric repeat-binding factor 1 | ||||
Refseq | XP_028213072.1 | 0.0 | telomeric repeat-binding factor 1-like | ||||
TrEMBL | A0A0R0KZQ6 | 0.0 | A0A0R0KZQ6_SOYBN; Uncharacterized protein | ||||
TrEMBL | A0A445LRW3 | 0.0 | A0A445LRW3_GLYSO; Uncharacterized protein | ||||
STRING | GLYMA02G37841.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3122 | 32 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09710.1 | 8e-46 | MYB_related family protein |
Publications ? help Back to Top | |||
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