PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN25525.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | G2-like | ||||||||
Protein Properties | Length: 356aa MW: 39686.1 Da PI: 8.5928 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 102.9 | 2e-32 | 220 | 275 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+p+LH+rFv+a++qLGG+++AtPk+i+elm+v gLt+++vkSHLQkYRl+ KHN25525.1 220 KQRRCWSPDLHRRFVDALQQLGGPQVATPKQIRELMQVVGLTNDEVKSHLQKYRLH 275 79****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.408 | 217 | 277 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.1E-29 | 218 | 278 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 6.65E-18 | 218 | 278 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.1E-26 | 220 | 275 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.2E-7 | 222 | 273 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 356 aa Download sequence Send to blast |
MEVSLDLSLA FVPRRTVCEI LGDIAKSKDG SRRMATIEDL VKRLEDEKKK IEAFKRELPL 60 CMILVNDAIS KLKEEIKGGV RMKDEAVVEE LMKLMKTNSE ANGSLMIVGN ESSDTKNWMN 120 SVQLWNVETK QRNEEGDLFV PSNPIEQKND TNKSVSKTVM KDNKKMSQVP SLGLMSPAVL 180 ELNHRKTESG YGHGSSMIIT SSVEIKGHHQ SQQPQQNPRK QRRCWSPDLH RRFVDALQQL 240 GGPQVATPKQ IRELMQVVGL TNDEVKSHLQ KYRLHFKRPQ GSSIGHANSG LCKMAQDKCG 300 DDKSGSPQGP LFLGGSGKGL SSSGRNSMDT EGDEESDCRN WKGGIHHQLQ PESDVL |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00629 | PBM | Transfer from PK14402.1 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN25525.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT096930 | 0.0 | BT096930.1 Soybean clone JCVI-FLGm-21I16 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006601003.1 | 0.0 | transcription factor HHO5 isoform X1 | ||||
Refseq | XP_028209874.1 | 0.0 | transcription factor HHO5-like isoform X1 | ||||
TrEMBL | A0A0B2QVA9 | 0.0 | A0A0B2QVA9_GLYSO; Myb family transcription factor APL | ||||
TrEMBL | K7MM93 | 0.0 | K7MM93_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA17G20520.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1208 | 34 | 107 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37180.1 | 1e-50 | G2-like family protein |
Publications ? help Back to Top | |||
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