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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN24624.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | WRKY | ||||||||
Protein Properties | Length: 275aa MW: 30023.1 Da PI: 10.543 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 99.1 | 2.9e-31 | 204 | 261 | 2 | 58 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnh 58 +D+y+WrKYGqK++kgs++pr+YY+C++ gCp++k+ver++++pk++++tYegeH+h KHN24624.1 204 SDEYSWRKYGQKPIKGSPYPRGYYKCSTVrGCPARKHVERAQDNPKMLIVTYEGEHRH 261 69************************9888***************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF10533 | 6.7E-12 | 161 | 201 | IPR018872 | Zn-cluster domain |
Gene3D | G3DSA:2.20.25.80 | 6.2E-32 | 196 | 262 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 32.179 | 198 | 264 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.62E-26 | 201 | 263 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.2E-36 | 203 | 263 | IPR003657 | WRKY domain |
Pfam | PF03106 | 9.3E-27 | 205 | 261 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 275 aa Download sequence Send to blast |
MEEAASAGLK SMEHLIRLLS PTSSNSNSSS SPLLNTNPNN LHCSQITDFT VSNFKQVINL 60 LNRTGHARFR RSPPQAQAQA QAQTQTSLQP QPETQQGFSL DFVKPTILNS KPINKDETLT 120 LSTTSSSFMS SITTDASVSD GKIGPFLPPS AAKPPLSSAH RKKCPDAAAA LSTKPSCHCS 180 KKRKSRVKRT IRVPAITKIA DIPSDEYSWR KYGQKPIKGS PYPRGYYKCS TVRGCPARKH 240 VERAQDNPKM LIVTYEGEHR HVLPLTAAAG VSFGH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 7e-23 | 199 | 264 | 10 | 74 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Regulates rhizobacterium B.cereus AR156-induced systemic resistance (ISR) to P.syringae pv. tomato DC3000, probably by activating the jasmonic acid (JA)- signaling pathway (PubMed:26433201). {ECO:0000250, ECO:0000269|PubMed:26433201}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN24624.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Strongly during leaf senescence (PubMed:11722756). Repressed by rhizobacterium B.cereus AR156 in leaves, and to a lower extent, by P.fluorescens WCS417r (PubMed:26433201). {ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:26433201}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU019578 | 0.0 | EU019578.1 Glycine max WRKY42 (WRKY42) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028204870.1 | 1e-165 | WRKY transcription factor WRKY51-like | ||||
Swissprot | Q9SV15 | 1e-87 | WRK11_ARATH; Probable WRKY transcription factor 11 | ||||
TrEMBL | A0A0B2QX55 | 0.0 | A0A0B2QX55_GLYSO; Putative WRKY transcription factor 11 | ||||
STRING | GLYMA15G18250.1 | 1e-158 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1314 | 34 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31550.1 | 9e-70 | WRKY DNA-binding protein 11 |