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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
KHN24051.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
| Family |
MIKC_MADS |
| Protein Properties |
Length: 241aa MW: 27693.4 Da PI: 7.9485 |
| Description |
MIKC_MADS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| KHN24051.1 | genome | TCUHK | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 95.4 | 2.5e-30 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gk ye++s
KHN24051.1 9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKQYEFCS 59
79***********************************************96 PP
|
| 2 | K-box | 97.4 | 2.2e-32 | 84 | 175 | 9 | 100 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
++ea + s+qqe+ +Lk+++e Lqr+qR+l+GedL++Ls keL++Le+qL++slk+iRs +++++l+q+++lq+ke+ l e n++Lr++lee
KHN24051.1 84 TKEALELSSQQEYLRLKARYEALQRSQRNLMGEDLGPLSSKELESLERQLDSSLKQIRSIRTQFMLDQLSDLQRKEHFLGESNRDLRQRLEE 175
556666789*******************************************************************************9986 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 241 aa
Download sequence Send
to blast |
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKQYEFCSG 60
SSMLKTLERY QKCNYGAPED NVATKEALEL SSQQEYLRLK ARYEALQRSQ RNLMGEDLGP 120
LSSKELESLE RQLDSSLKQI RSIRTQFMLD QLSDLQRKEH FLGESNRDLR QRLEEFQINP 180
LQLNPSAEDM GYGRHPGQPQ GHALFQPLEC EPTLQIGYHP DPVSVVTEGP SMNNYMAGWL 240
P
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 4ox0_A | 1e-45 | 75 | 173 | 1 | 101 | Developmental protein SEPALLATA 3 |
| 4ox0_B | 1e-45 | 75 | 173 | 1 | 101 | Developmental protein SEPALLATA 3 |
| 4ox0_C | 1e-45 | 75 | 173 | 1 | 101 | Developmental protein SEPALLATA 3 |
| 4ox0_D | 1e-45 | 75 | 173 | 1 | 101 | Developmental protein SEPALLATA 3 |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AJ878424 | 0.0 | AJ878424.1 Glycine max mRNA for MADS transcription factor (mads28 gene). |
| GenBank | BT098013 | 0.0 | BT098013.1 Soybean clone JCVI-FLGm-16B9 unknown mRNA. |
| Publications
? help Back to Top |
- Jaillon O, et al.
The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
Nature, 2007. 449(7161): p. 463-7
[PMID:17721507] - Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
Plant Physiol., 2009. 149(1): p. 354-69
[PMID:18997115] - Qi X, et al.
Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
Nat Commun, 2014. 5: p. 4340
[PMID:25004933] - Grimplet J,Martínez-Zapater JM,Carmona MJ
Structural and functional annotation of the MADS-box transcription factor family in grapevine.
BMC Genomics, 2016. 17: p. 80
[PMID:26818751]
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