PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN23555.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HD-ZIP
Protein Properties Length: 284aa    MW: 32389.9 Da    PI: 4.4257
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN23555.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.41.6e-2065118356
                 --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 k++++++eq++ Le+ Fe+++++  e++++LAkklgL+ rqV vWFqNrRa++k
  KHN23555.1  65 KKHRLSSEQVHLLEKSFEEENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWK 118
                 67889************************************************9 PP
2HD-ZIP_I/II133.29.7e-4364155192
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                  ekk+rls+eqv+lLE+sFeee+kLeperK++la++LglqprqvavWFqnrRAR+ktkqlE+d+++Lk++yd+l ++ +++ ke+e+L++e+ 
   KHN23555.1  64 EKKHRLSSEQVHLLEKSFEEENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDFDVLKSSYDTLLSSYDSIMKENEKLKSEVV 155
                  69**************************************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.81E-2051122IPR009057Homeodomain-like
PROSITE profilePS5007118.38260120IPR001356Homeobox domain
SMARTSM003894.4E-1962124IPR001356Homeobox domain
CDDcd000863.11E-1965121No hitNo description
PfamPF000468.7E-1865118IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.606.8E-2266127IPR009057Homeodomain-like
PRINTSPR000314.3E-691100IPR000047Helix-turn-helix motif
PROSITE patternPS00027095118IPR017970Homeobox, conserved site
PRINTSPR000314.3E-6100116IPR000047Helix-turn-helix motif
PfamPF021835.3E-18120162IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MESGRIFFGA SASSGNNMLF LGNTELAFRG RSMMSMEEAS KRRPFFTSPD ELYDEEYYEK  60
QSPEKKHRLS SEQVHLLEKS FEEENKLEPE RKTQLAKKLG LQPRQVAVWF QNRRARWKTK  120
QLERDFDVLK SSYDTLLSSY DSIMKENEKL KSEVVSLNEK LQVQAKEVPE EPLCDKKVDP  180
IPVDEDMAPI FGTRVEDHLS SGSVGSAVVD EGSPQVVVDS VDSYILADNY GGCVGPVERV  240
QSEEEDGSDD GRSYLDVFVV SETEHQNHEE GETLGWWTNM YYVG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1112120RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:8535134}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN23555.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0937280.0BT093728.1 Soybean clone JCVI-FLGm-24I10 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028216074.10.0homeobox-leucine zipper protein HAT5-like
SwissprotQ022832e-93HAT5_ARATH; Homeobox-leucine zipper protein HAT5
TrEMBLA0A0B2QQ410.0A0A0B2QQ41_GLYSO; Homeobox-leucine zipper protein HAT5
STRINGGLYMA19G01300.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF112833039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.15e-87homeobox 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  3. Ribone PA,Capella M,Arce AL,Chan RL
    A uORF Represses the Transcription Factor AtHB1 in Aerial Tissues to Avoid a Deleterious Phenotype.
    Plant Physiol., 2017. 175(3): p. 1238-1253
    [PMID:28956754]