PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN23250.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MYB_related | ||||||||
Protein Properties | Length: 296aa MW: 32468.6 Da PI: 10.1518 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 33.1 | 1.3e-10 | 5 | 55 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46 +++WT+eE+ l+ +v ++G g W+tI R+ ++k++w++ KHN23250.1 5 KQKWTAEEEAALKAGVLKHGAGKWRTILTDPEfsailHMRSNVDLKDKWRN 55 79***********************************99**********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.045 | 1 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.73E-15 | 2 | 67 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.3E-5 | 4 | 59 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-12 | 4 | 56 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.5E-7 | 5 | 55 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 9.72E-17 | 6 | 57 | No hit | No description |
SMART | SM00526 | 1.6E-7 | 104 | 182 | IPR005818 | Linker histone H1/H5, domain H15 |
PROSITE profile | PS51504 | 21.372 | 118 | 187 | IPR005818 | Linker histone H1/H5, domain H15 |
SuperFamily | SSF46785 | 4.03E-15 | 124 | 196 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 4.4E-13 | 124 | 190 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00538 | 1.0E-7 | 127 | 180 | IPR005818 | Linker histone H1/H5, domain H15 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006334 | Biological Process | nucleosome assembly | ||||
GO:0000786 | Cellular Component | nucleosome | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 296 aa Download sequence Send to blast |
MGAPKQKWTA EEEAALKAGV LKHGAGKWRT ILTDPEFSAI LHMRSNVDLK DKWRNINVTA 60 IWGSRQKAKL ALKRNLPAPK IDNNHMALST VVRHDEVLDT KPLAVSGGPL QSTNLKEQIS 120 RLVDNHILEA IVYMKEQKGS DKAAIASFIE EKYRFPPNLS KLLPAKLKHM VASGKIIKEK 180 HKYRIAPSST VSEKRRCSSL VLLEDRPKDP SEAHKNDDVN ILLKSQIDAE ISKVKGLTAQ 240 EAAAAAAKAV AEAETAIAQA EAAAREAEAA EAEAEAAQVF AKAAMKALKC KMLHIW |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds preferentially double-stranded telomeric repeats, but it can also bind to the single G-rich telomeric strand. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00626 | PBM | Transfer from PK06103.1 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN23250.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 1e-124 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001235806.2 | 0.0 | MYB transcription factor MYB85 | ||||
Refseq | XP_028211343.1 | 0.0 | telomere repeat-binding factor 2-like isoform X2 | ||||
Swissprot | Q9FJW5 | 3e-74 | TRB2_ARATH; Telomere repeat-binding factor 2 | ||||
TrEMBL | A0A0B2QPE0 | 0.0 | A0A0B2QPE0_GLYSO; Histone H1 | ||||
STRING | GLYMA17G17370.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1453 | 33 | 101 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67580.2 | 2e-69 | MYB_related family protein |
Publications ? help Back to Top | |||
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