PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN23159.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | TALE | ||||||||
Protein Properties | Length: 307aa MW: 34913.5 Da PI: 4.6968 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 30.6 | 5.9e-10 | 249 | 283 | 21 | 55 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 + +yp++ee+ +L++ +gL+++q+ +WF N+R ++ KHN23159.1 249 RWPYPTEEEKVQLSEMTGLDQKQINNWFINQRKRH 283 469*****************************885 PP | |||||||
2 | ELK | 37.2 | 6.2e-13 | 203 | 224 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK++LlrKY+gyL+sL++EF+ KHN23159.1 203 ELKEMLLRKYGGYLSSLRKEFL 224 9********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 4.1E-20 | 60 | 104 | IPR005540 | KNOX1 |
Pfam | PF03790 | 2.6E-20 | 62 | 103 | IPR005540 | KNOX1 |
SMART | SM01256 | 8.0E-25 | 107 | 158 | IPR005541 | KNOX2 |
Pfam | PF03791 | 2.1E-23 | 110 | 157 | IPR005541 | KNOX2 |
Pfam | PF03789 | 4.6E-10 | 203 | 224 | IPR005539 | ELK domain |
SMART | SM01188 | 5.0E-7 | 203 | 224 | IPR005539 | ELK domain |
PROSITE profile | PS51213 | 11.366 | 203 | 223 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 12.714 | 223 | 286 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.05E-20 | 225 | 298 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 1.6E-13 | 225 | 290 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-27 | 228 | 288 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 8.78E-13 | 235 | 286 | No hit | No description |
Pfam | PF05920 | 2.5E-17 | 243 | 282 | IPR008422 | Homeobox KN domain |
PROSITE pattern | PS00027 | 0 | 261 | 284 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 307 aa Download sequence Send to blast |
MEDIYKMNPL LSCPGGDVVR EVNVNVNSAI AASASELNLG LVANNFFQLE EPESSDMSDR 60 FIKTQIATHP LYPNLVSAYI ECRKVGAPPE LASLLEEIAR ESHPTDALRE IGNDPELDEF 120 MESYCEVLHR YKQELSKPFN EATLFLCSIE SQLSNLCKGT LTMPLNNNRS DEAAGISEDE 180 LSWEKVEAVD GDESSGPRPG DQELKEMLLR KYGGYLSSLR KEFLKKRKKG KLPKDARMIL 240 MDWWNTHYRW PYPTEEEKVQ LSEMTGLDQK QINNWFINQR KRHWKPTEDM RFAIMDGVSG 300 SGLGGPM |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 218 | 227 | LRKEFLKKRK |
2 | 224 | 228 | KKRKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in shoot formation during early embryogenesis. {ECO:0000269|PubMed:10488233}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00670 | PBM | Transfer from GRMZM2G087741 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN23159.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT094097 | 0.0 | BT094097.1 Soybean clone JCVI-FLGm-18M11 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006605816.1 | 0.0 | homeobox protein knotted-1-like 1 | ||||
Refseq | XP_006605817.1 | 0.0 | homeobox protein knotted-1-like 1 | ||||
Swissprot | Q9FP29 | 5e-96 | KNOS1_ORYSJ; Homeobox protein knotted-1-like 1 | ||||
TrEMBL | A0A0B2QST1 | 0.0 | A0A0B2QST1_GLYSO; Homeobox protein knotted-1-like 1 | ||||
TrEMBL | K7N2L1 | 0.0 | K7N2L1_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA20G22986.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF620 | 34 | 125 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G23380.1 | 7e-81 | KNOTTED1-like homeobox gene 6 |
Publications ? help Back to Top | |||
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