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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN23143.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | C2H2 | ||||||||
Protein Properties | Length: 157aa MW: 17262.5 Da PI: 10.3301 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 10.9 | 0.0014 | 18 | 40 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+++F + L H +H KHN23143.1 18 FECKTCNRRFASFQALGGHRASH 40 89*********999998888887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 7.38E-9 | 16 | 87 | No hit | No description |
Pfam | PF13912 | 1.6E-12 | 17 | 42 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.097 | 18 | 45 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.25 | 18 | 40 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 20 | 40 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 5.2E-10 | 64 | 89 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.162 | 65 | 92 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.5 | 65 | 87 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 67 | 87 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 157 aa Download sequence Send to blast |
MLLSRTTTNL NTSNNRVFEC KTCNRRFASF QALGGHRASH KKPRLMGESD SQVLIHGSPP 60 KPKTHECSIC GLEFAIGQAL GGHMRRHRAA AASNGNMHTT INSWLSSSNS GGSTVDNTLP 120 PNMNNKANNT KRVLFPDLNL TPLENDLEFL KFGHCFN |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN23143.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT091233 | 0.0 | BT091233.1 Soybean clone JCVI-FLGm-7B5 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001236265.1 | 1e-114 | C2H2-type zinc finger domain-containing protein | ||||
TrEMBL | C6T1C7 | 1e-112 | C6T1C7_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA20G23180.1 | 1e-113 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF316 | 34 | 175 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37430.1 | 8e-29 | C2H2 family protein |