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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
KHN23056.1 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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| Family |
MIKC_MADS |
| Protein Properties |
Length: 244aa MW: 28504.1 Da PI: 9.3239 |
| Description |
MIKC_MADS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| KHN23056.1 | genome | TCUHK | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 91.6 | 3.9e-29 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
+rienk+nrqvtfskRr g+lKKA+ELSvLCdaev +iifss+gkl+ yss
KHN23056.1 9 ERIENKINRQVTFSKRRSGLLKKAFELSVLCDAEVGLIIFSSRGKLFQYSS 59
69***********************************************96 PP
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| 2 | K-box | 68.2 | 2.7e-23 | 76 | 158 | 3 | 85 |
K-box 3 kssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkek 85
ks++ + e++++s ++e+ kL++++e+L+r+qRh++GedLe+Ls+k+Lq+Le+qL+ l R+++++ l++ +el++k
KHN23056.1 76 KSHTGDSLEHDSQSAYHEFLKLRAKYESLERTQRHFQGEDLEPLSFKDLQSLEKQLDITLALTRQHQTKKLMARADELREKVS 158
555556778889*******************************************************************9976 PP
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| Protein Features
? help Back to Top |
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| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| PROSITE profile | PS50066 | 31.202 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
| SMART | SM00432 | 7.6E-38 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
| CDD | cd00265 | 4.20E-39 | 2 | 75 | No hit | No description |
| SuperFamily | SSF55455 | 5.1E-31 | 2 | 76 | IPR002100 | Transcription factor, MADS-box |
| PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 9.6E-30 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF00319 | 3.9E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 9.6E-30 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 9.6E-30 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF01486 | 5.8E-19 | 84 | 159 | IPR002487 | Transcription factor, K-box |
| PROSITE profile | PS51297 | 12.002 | 87 | 206 | IPR002487 | Transcription factor, K-box |
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 244 aa
Download sequence Send
to blast |
MGRGRVVLER IENKINRQVT FSKRRSGLLK KAFELSVLCD AEVGLIIFSS RGKLFQYSST 60
DITKIIERYR QCRYSKSHTG DSLEHDSQSA YHEFLKLRAK YESLERTQRH FQGEDLEPLS 120
FKDLQSLEKQ LDITLALTRQ HQTKKLMARA DELREKVSCR GYKKPSLESK VFSLNNHEKD 180
EFSSLILDNN NYIQMHATQV DQFESETALN TCRFQHQEVV SKEKAIDTRT EHSQSSHNKN 240
NGWL
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