PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN23019.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HD-ZIP
Protein Properties Length: 371aa    MW: 42902.3 Da    PI: 8.4202
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN23019.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox47.33.5e-151391856
                HHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox 18 lFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                lF+k+++p++ er+++Ak lgL+ +qVk+WFqN+R+++k
  KHN23019.1  1 LFRKCPNPDEIERRQIAKDLGLEPKQVKFWFQNKRTQKK 39
                6***********************************998 PP
2START94.32.4e-301893692166
                 HHHHHHHHHHHHHHHC-TT-EEEE.......EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEE CS
       START   2 laeeaaqelvkkalaeepgWvkss.......esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kaetle 83 
                 +a +a +el+k+   +ep+Wvkss             e++ ++ +  +       ++e +++s++v   + +lv  ll++   W + +     ka t++
  KHN23019.1 189 IAVAAKDELLKLLRTNEPLWVKSStdqryvlH----LECYETIFPRINhfknskARVESSKDSRIVRIKAKELVDMLLNSE-IWENLFSrivtKARTIQ 282
                 688999******************65543321....3344433333335677777****************9**9999999.66666666666****** PP

                 EECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEE CS
       START  84 vissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtw 166
                 v+++g      g+l lm  e+ +lsplvp R+f+f+Ry+ q +a +wvi+dvSvd  ++++ ++++ R   +pSg++i+  sng ++v  
  KHN23019.1 283 VLENGslenrsGVLLLMREEMHVLSPLVPsREFYFLRYCHQVEANVWVIADVSVDCMKENNHDPNCWR---FPSGCMIQGISNGMCQVST 369
                 ***********************************************************999999999...****************965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007113.831141IPR001356Homeobox domain
SMARTSM003890.0012145IPR001356Homeobox domain
PfamPF000461.3E-12139IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.2E-12239IPR009057Homeodomain-like
CDDcd000861.59E-10239No hitNo description
SuperFamilySSF466891.63E-11240IPR009057Homeodomain-like
PROSITE patternPS0002701639IPR017970Homeobox, conserved site
PROSITE profilePS5084831.587179371IPR002913START domain
SuperFamilySSF559611.92E-21180370No hitNo description
PfamPF018521.0E-24189369IPR002913START domain
Gene3DG3DSA:3.30.530.201.9E-4245368IPR023393START-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
LFRKCPNPDE IERRQIAKDL GLEPKQVKFW FQNKRTQKKT ISERVDNNVL RVENERMHNE  60
NLVLREALKT IICPSCGGPH NEDERRELCL EQLRLENARL KAQHEKLSKF LVQHMDKPIL  120
EQNLDSPIRG SSSHGPLLGS SLRLRAGRSR MNLGASTSHD SFQDEEDTMS SQAGSKIITQ  180
MEKTMMAHIA VAAKDELLKL LRTNEPLWVK SSTDQRYVLH LECYETIFPR INHFKNSKAR  240
VESSKDSRIV RIKAKELVDM LLNSEIWENL FSRIVTKART IQVLENGSLE NRSGVLLLMR  300
EEMHVLSPLV PSREFYFLRY CHQVEANVWV IADVSVDCMK ENNHDPNCWR FPSGCMIQGI  360
SNGMCQVSTY M
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN23019.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028180220.10.0homeobox-leucine zipper protein HDG11-like isoform X1
RefseqXP_028180221.10.0homeobox-leucine zipper protein HDG11-like isoform X2
TrEMBLA0A0B2QSC70.0A0A0B2QSC7_GLYSO; Homeobox-leucine zipper protein HDG11 (Fragment)
STRINGGLYMA09G02990.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10263398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73360.19e-81homeodomain GLABROUS 11
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]