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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN22930.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | WRKY | ||||||||
Protein Properties | Length: 495aa MW: 54810.8 Da PI: 5.6162 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 95.6 | 3.3e-30 | 250 | 309 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt a gCpv+k+v+r+ +d +++++tYeg+Hnh+ KHN22930.1 250 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApGCPVRKQVQRCIDDMSILITTYEGTHNHP 309 58***************************99****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.8E-32 | 235 | 311 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 7.19E-28 | 243 | 311 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.207 | 245 | 311 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.7E-37 | 250 | 310 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.6E-27 | 251 | 309 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 495 aa Download sequence Send to blast |
MGRSREKPTK MEIDLSLKID TDDEHKEEED ERVKEDEEQE MAQIQDNNKE EIPEATAGEI 60 EDDASVIETS LQDNTKTKEL SVLQMEMESM KEENKVLRKV VEQTMKDYYD LQMKFSAIQE 120 NNKRKDHEIS LSLQDIATTS GEGPSRILEI FNKQMQSAPS PPHPDHDDDS LSESELGLSL 180 RLQPSTSHHK ESDVGNNKED KNDQQLASYA SVQNKLQRTN CLPGITTHAA SPPNRKARVS 240 VRARCEAATM NDGCQWRKYG QKIAKGNPCP RAYYRCTVAP GCPVRKQVQR CIDDMSILIT 300 TYEGTHNHPL PVGATAMAST ASAAASFMLL DSSNPISDGT STFTQAPFPY NTFHSLNPAS 360 NFRSISPGDP SKGIVLDLTS NLNEPPLRFS SGSSSNTTTD PRFSWMQNKY QGGGAIAMNN 420 TFHKPRALDI HDRIWKGEES NNNKPLDHDN VSSIASDPKF RVAVAAAITS LMNKESHATH 480 PIGTSFGPRS GQNGS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 2e-21 | 237 | 313 | 1 | 76 | WRKY transcription factor 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN22930.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT096848 | 0.0 | BT096848.1 Soybean clone JCVI-FLGm-15D10 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028232370.1 | 0.0 | probable WRKY transcription factor 9 | ||||
TrEMBL | A0A0B2QN87 | 0.0 | A0A0B2QN87_GLYSO; Putative WRKY transcription factor 9 | ||||
STRING | XP_007159029.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9320 | 31 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68150.1 | 1e-70 | WRKY DNA-binding protein 9 |
Publications ? help Back to Top | |||
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