PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN22880.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MYB | ||||||||
Protein Properties | Length: 305aa MW: 34317.9 Da PI: 4.6375 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.5 | 2.3e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd +l+ +v+++G+ +W+ +r g+ R++k+c++rw +yl KHN22880.1 14 KGTWTPEEDRKLIAYVTRYGSWNWRQLPRFAGLARCGKSCRLRWMNYL 61 799*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 58.6 | 1.4e-18 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T++Ede +++ +k+lG++ W++Ia++++ gRt++++k++w++ KHN22880.1 67 RGNFTQQEDECIIRMHKKLGNK-WSAIAAELP-GRTDNEIKNHWHTT 111 89********************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.383 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.91E-30 | 12 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.6E-11 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.4E-14 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.9E-23 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.65E-9 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 26.5 | 62 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 2.1E-17 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-16 | 67 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.3E-26 | 69 | 114 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.86E-12 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 305 aa Download sequence Send to blast |
MVRTPSCDKS GTRKGTWTPE EDRKLIAYVT RYGSWNWRQL PRFAGLARCG KSCRLRWMNY 60 LRPNVKRGNF TQQEDECIIR MHKKLGNKWS AIAAELPGRT DNEIKNHWHT TLKKWSQQNA 120 ITNEEARTSK SKDKVPNKGV TVTLPANSSL MSDNSSSSPV SSTCSEFSSI TSDNSTAASM 180 ENLVFEDDDF GFLDSYNESF WTELNLDDIS FDAPCEMDLG DTNVSFESTS CSNSNTLDSL 240 HGSTSESIVV DNDFGGFLDA YTKAAVDNFW TQPYVADMSH VPSELLVPSM AESEYFTPIY 300 DDLWG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-29 | 14 | 114 | 7 | 106 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN22880.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015039 | 7e-47 | AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003540870.1 | 0.0 | transcription factor MYB30 isoform X1 | ||||
Refseq | XP_028193598.1 | 0.0 | transcription factor MYB30-like isoform X1 | ||||
TrEMBL | A0A445HPE6 | 0.0 | A0A445HPE6_GLYSO; Transcription factor MYB14 isoform A | ||||
TrEMBL | I1LRW1 | 0.0 | I1LRW1_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA12G11390.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF356 | 33 | 186 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31180.1 | 2e-56 | myb domain protein 14 |
Publications ? help Back to Top | |||
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