PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN22879.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 323aa    MW: 36799.8 Da    PI: 5.0935
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN22879.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.31.2e-151461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g WT+eEd +l+ +v+++G  +W+  ++  g+ R++k+c++rw +yl
       KHN22879.1 14 KGTWTPEEDMKLIAYVTRYGCWNWRQLPKFAGLARCGKSCRLRWMNYL 61
                     799*****************99************************97 PP
2Myb_DNA-binding60.34.2e-1967111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg++T+eE+e +++ +k+lG++ W++Ia++++ gRt++++k++w++ 
       KHN22879.1  67 RGNFTQEEEECIIRMHKKLGNR-WSAIAAELP-GRTDNEIKNHWHTT 111
                      89********************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.712961IPR017930Myb domain
SuperFamilySSF466893.59E-3011108IPR009057Homeodomain-like
SMARTSM007171.8E-91363IPR001005SANT/Myb domain
PfamPF002491.0E-131461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-231568IPR009057Homeodomain-like
CDDcd001674.67E-91661No hitNo description
PROSITE profilePS5129428.28262116IPR017930Myb domain
SMARTSM007173.9E-1866114IPR001005SANT/Myb domain
PfamPF002495.5E-1767111IPR001005SANT/Myb domain
CDDcd001674.87E-1369112No hitNo description
Gene3DG3DSA:1.10.10.602.8E-2669115IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MVRTPSCDKS GMRKGTWTPE EDMKLIAYVT RYGCWNWRQL PKFAGLARCG KSCRLRWMNY  60
LRPNLKRGNF TQEEEECIIR MHKKLGNRWS AIAAELPGRT DNEIKNHWHT TLKKRSQQNT  120
VTIEETRVSK SKNNESVPNK GVTVTLLATS SQMSDNSSIS PVSSSCSEFS SITSYHSTAA  180
SCMENLVFED DDFGFLDSYN ESFWTQLNLD DISNNAPCEI FSEDSNGSFQ STDATQIHDS  240
CAKSPTTSES NIVVDNDFVD FLDAYKDATV DNFWSQTYVA DMSHVPTELL VHSVAESECF  300
TPIYDDLWGQ SYLYHENHHG LFR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C2e-29141154104C-Myb DNA-Binding Domain
1msf_C2e-29141154104C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that regulates freezing tolerance by affecting expression of CBF genes. {ECO:0000269|PubMed:24415840}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN22879.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA), jasmonic acid (JA), salt (NaCl), ethylene and auxin (IAA) (PubMed:16463103). Down-regulated by cold treatment (PubMed:24415840). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:24415840}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2358971e-48AC235897.2 Glycine max clone GM_WBc0123J08, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028193801.10.0transcription factor MYB14-like
SwissprotQ9SJX84e-59MYB14_ARATH; Transcription factor MYB14
TrEMBLA0A445HNU60.0A0A445HNU6_GLYSO; Transcription factor MYB14 isoform A
STRINGGLYMA12G11340.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35633186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.12e-59myb domain protein 14
Publications ? help Back to Top
  1. Chen Y, et al.
    AtMYB14 Regulates Cold Tolerance in Arabidopsis.
    Plant Mol. Biol. Rep., 2013. 31: p. 87-97
    [PMID:24415840]
  2. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]