PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN22491.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 320aa    MW: 35416 Da    PI: 9.664
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN22491.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.69.6e-32249306359
                 -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                 D+y+WrKYGqK++kgs++pr+YY+Cts  gCp++k+ver+ +d +++++tYegeHnh+
  KHN22491.1 249 DEYSWRKYGQKPIKGSPHPRGYYKCTSVrGCPARKHVERAVDDSNMLVVTYEGEHNHS 306
                 9*************************998****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.5E-16200245IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.6E-33235307IPR003657WRKY domain
PROSITE profilePS5081130.699242308IPR003657WRKY domain
SuperFamilySSF1182903.53E-27243307IPR003657WRKY domain
SMARTSM007742.8E-38247307IPR003657WRKY domain
PfamPF031066.1E-27249305IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MLLAVSDGNT IAVKEAASAG IHSVEKLVNM ILNQHREGGS ELEAVADVAV NRFSEVISLL  60
EKPTTTRTTG HARFRRAPTT APPVPVVQLQ QMVHDSKHKL QQQQNETEQK QQTSAFKVYC  120
PPPPPPLPQN QNHQEQPFIL PLHNNEANGS TTNSYVSTLS MDTESLQRSC LSSSGFQISH  180
MSHQGGSFVR KPPLSTNSVK RKCNSTGFPD TKCGSSSAQC HCYKKRKLRL KRVIRVPAIS  240
SKNADIPPDE YSWRKYGQKP IKGSPHPRGY YKCTSVRGCP ARKHVERAVD DSNMLVVTYE  300
GEHNHSQITS EVANVILESS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-202453051271WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00450DAPTransfer from AT4G24240Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN22491.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028199829.10.0probable WRKY transcription factor 7 isoform X1
SwissprotQ9STX05e-84WRKY7_ARATH; Probable WRKY transcription factor 7
TrEMBLA0A0B2QM440.0A0A0B2QM44_GLYSO; Putative WRKY transcription factor 7
STRINGGLYMA17G35750.21e-142(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2240024
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24240.17e-55WRKY DNA-binding protein 7
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]