PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN21563.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family CO-like
Protein Properties Length: 366aa    MW: 40844.4 Da    PI: 5.1419
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN21563.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box247.9e-081255340
    zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                +r C+ + + ++++fC  ++ +lC+ C +  H+       H++v
  KHN21563.1 12 ARACDSCVSRRARWFCAADDAFLCHGCDTLVHSAnqlasrHERV 55
                578*****************************657788888876 PP
2CCT66.95.7e-23311353143
         CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 
                 Rea+++RY+eKr+tR+F KkirYe+RK +Ae+RpR+KGrFvk+
  KHN21563.1 311 REARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKR 353
                 9****************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.4241057IPR000315B-box-type zinc finger
SMARTSM003366.9E-91057IPR000315B-box-type zinc finger
PfamPF006431.8E-61255IPR000315B-box-type zinc finger
CDDcd000211.03E-81357No hitNo description
PfamPF062038.0E-18311353IPR010402CCT domain
PROSITE profilePS5101715.993311353IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MKDAGALGGK TARACDSCVS RRARWFCAAD DAFLCHGCDT LVHSANQLAS RHERVRLQTA  60
SSKVTTTHAW HSGFTRKART PRHNSKHFAL QQRLKDEVLF NNTSVLPLVP ELGGEEQEPV  120
VVDNDETEEQ MLCRVPVFDP FDVRTDDLDS FSDMDFAEFA ADVESLLDKE DDEISACVGG  180
GEGEGEGVQG AMVKVKDEEE IDGDVACYLE SVFDDAFHWN NIESVLSDAR EEKEGVVACD  240
VGVGDEEGGT KRDIFLRLNY DEVITAWSSQ GSSPWTTSNP PKFNSDYDFS LGLSGVGGEV  300
RSLRGHLDGG REARVSRYRE KRRTRLFAKK IRYEVRKLNA EKRPRMKGRF VKRTCFVGAN  360
AFPAYH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1321337RRTRLFAKKIRYEVRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN21563.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ8642650.0GQ864265.1 Glycine max CONSTANS-like zinc finger protein (COL11) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028233901.10.0zinc finger protein CONSTANS-LIKE 16-like
SwissprotQ8RWD02e-85COL16_ARATH; Zinc finger protein CONSTANS-LIKE 16
TrEMBLA0A445KSM00.0A0A445KSM0_GLYSO; Zinc finger protein CONSTANS-LIKE 16
STRINGGLYMA05G35151.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14733392
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.14e-88B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]