PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN21481.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | C2H2 | ||||||||
Protein Properties | Length: 200aa MW: 22822.2 Da PI: 9.2115 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 21.9 | 4.5e-07 | 19 | 41 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ Cgk F r nL+ H+r H KHN21481.1 19 HYCQVCGKGFERDANLRMHMRAH 41 68*******************99 PP | |||||||
2 | zf-C2H2 | 13 | 0.00032 | 115 | 138 | 1 | 23 |
EEETTTT.EEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCg.ksFsrksnLkrHirtH 23 y+C+ C+ k Fs s+L++H + + KHN21481.1 115 YVCKRCNqKQFSVLSDLRTHEKHC 138 9*******************9876 PP | |||||||
3 | zf-C2H2 | 11.8 | 0.00072 | 146 | 161 | 5 | 20 |
TTTEEESSHHHHHHHH CS zf-C2H2 5 dCgksFsrksnLkrHi 20 Cg+sFsrk+ L+ H KHN21481.1 146 TCGTSFSRKDKLMGHV 161 6************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.68E-6 | 17 | 44 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.4E-6 | 19 | 46 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 12.591 | 19 | 46 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0058 | 19 | 41 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 21 | 41 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 170 | 77 | 110 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 23 | 115 | 137 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 200 aa Download sequence Send to blast |
MNSDIIELDA ADLLAKYTHY CQVCGKGFER DANLRMHMRA HGDEYKTNAA LSNPIKNKGN 60 LLEGGRECLM STVKPKYSCP QEGCRWNQRH VKFQPLKSMI CAKNHYKRSH CPKMYVCKRC 120 NQKQFSVLSD LRTHEKHCGD LKWQCTCGTS FSRKDKLMGH VALFVGHQPA AAINNSNALS 180 FSAKLEQQHT LQMQIEDSSR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Together with STOP1, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:23935008}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN21481.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015040 | 1e-165 | AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028189001.1 | 1e-152 | protein SENSITIVE TO PROTON RHIZOTOXICITY 2-like isoform X1 | ||||
Refseq | XP_028189003.1 | 1e-152 | protein SENSITIVE TO PROTON RHIZOTOXICITY 2-like isoform X3 | ||||
Swissprot | Q0WT24 | 6e-90 | STOP2_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 2 | ||||
TrEMBL | A0A445IDG5 | 1e-151 | A0A445IDG5_GLYSO; Protein SENSITIVE TO PROTON RHIZOTOXICITY 2 isoform A | ||||
STRING | GLYMA13G39610.2 | 1e-145 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8099 | 30 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22890.1 | 3e-92 | C2H2 family protein |
Publications ? help Back to Top | |||
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