PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN21081.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 432aa    MW: 47823 Da    PI: 7.3821
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN21081.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2232.1e-07229251123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 y C+ Cgk F+r  nL+ H+r H
  KHN21081.1 229 YFCQVCGKGFKRDANLRMHMRAH 251
                 78*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.89E-7227265No hitNo description
SMARTSM003556.7E-4229251IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.5E-7229254IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015713.193229256IPR007087Zinc finger, C2H2
PROSITE patternPS000280231251IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.5E-7287292IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM00355170289322IPR015880Zinc finger, C2H2-like
SMARTSM0035534327349IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MMPINEATIS SSTNDFQELH MFPVAVNEYL VSPSLEASSS SASHSSNSLL FHLLLLKDKL  60
GQLQNLVDVL VSPQQNLPES TPTAISTINN AIQEIIMAAT SMRFTCQQMI PSSSSGTNTT  120
NELQQQQIDH GRLLPPHHES NFVHNNRGVA SNNINIVSDI NRGQSFLLSS SIEGEALDWF  180
AESYNNNRNS GNYCNPKDDE AANIISNIMG EMSDIIELDA ADLLAKYSYF CQVCGKGFKR  240
DANLRMHMRA HGEEYKTSSA LCNPMKNNKE NSNLLLLGAE EGSGATKRYS CPQQGCRWNQ  300
RHAKFQPLKS MICAKNHYKR SHCPKMYVCN RCNQKHFSVI SDLRTHEKHC GDPKWLCSCG  360
TTFSRKDKLM GHVALFVGHT PVTSGLSSYS GKSEQLCSTF GSVILCMVAN DHSNIVHYIV  420
PGITSLAIFS SN
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Together with STOP1, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:23935008}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN21081.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028192264.10.0protein SENSITIVE TO PROTON RHIZOTOXICITY 2-like
SwissprotQ0WT241e-103STOP2_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 2
TrEMBLA0A445HMS80.0A0A445HMS8_GLYSO; Protein SENSITIVE TO PROTON RHIZOTOXICITY 2
STRINGGLYMA12G08680.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80993045
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22890.13e-96C2H2 family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]