PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN20933.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MYB | ||||||||
Protein Properties | Length: 200aa MW: 22627.9 Da PI: 9.9417 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.8 | 2.5e-18 | 13 | 60 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W+++Ed++l+d+++ +G g+W++I++ g++R++k+c++rw++yl KHN20933.1 13 KGAWSKQEDQKLIDYIRVHGEGCWRSIPKAAGLHRCGKSCRLRWLNYL 60 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 49.3 | 1.1e-15 | 67 | 110 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 g + ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++ KHN20933.1 67 GIFAEDEEDLIIKLHALLGNR-WSLIAGRLP-GRTDNEVKNYWNSH 110 66779****************.*********.***********987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-24 | 4 | 62 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 26.514 | 8 | 64 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.77E-29 | 11 | 107 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.4E-15 | 12 | 62 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.8E-17 | 13 | 60 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.57E-12 | 15 | 60 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 8.8E-25 | 63 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.4E-14 | 65 | 113 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 20.514 | 65 | 115 | IPR017930 | Myb domain |
Pfam | PF00249 | 4.5E-14 | 69 | 110 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.64E-11 | 71 | 111 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 200 aa Download sequence Send to blast |
MRKPCCDKES INKGAWSKQE DQKLIDYIRV HGEGCWRSIP KAAGLHRCGK SCRLRWLNYL 60 RPDIKRGIFA EDEEDLIIKL HALLGNRWSL IAGRLPGRTD NEVKNYWNSH IRRKLIKMGI 120 DPNNHKPHQS FPRSHASTEG ASTSESMNKV PFFKSSGVAA SDHRISFTKE ETAIISSSSP 180 PLNLDLTIAL PSPMLRAAEE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 2e-29 | 10 | 115 | 24 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. | |||||
UniProt | Transcription repressor involved in regulation of protection against UV. Mediates transcriptional repression of CYP73A5, the gene encoding trans-cinnamate 4-monooxygenase, thereby regulating the accumulation of the UV-protectant compound sinapoylmalate. {ECO:0000269|PubMed:11080161}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN20933.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by exposure to UV-B light. {ECO:0000269|PubMed:11080161}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT090465 | 0.0 | BT090465.1 Soybean clone JCVI-FLGm-4F17 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028200149.1 | 1e-148 | myb-related protein 308-like | ||||
Swissprot | P81393 | 1e-76 | MYB08_ANTMA; Myb-related protein 308 | ||||
Swissprot | Q9SZP1 | 3e-76 | MYB4_ARATH; Transcription repressor MYB4 | ||||
TrEMBL | A0A445H2P0 | 1e-147 | A0A445H2P0_GLYSO; Myb-related protein 308 | ||||
STRING | GLYMA14G07510.1 | 1e-135 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF264 | 34 | 221 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38620.1 | 1e-78 | myb domain protein 4 |