PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN20739.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 311aa    MW: 35549.7 Da    PI: 6.5778
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN20739.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.64.6e-162471148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W+ eEd ll ++++ +G g+W++ a + g++Rt+k+c++rw++yl
       KHN20739.1 24 RGPWSVEEDYLLTHYIANHGEGRWNLLAIRSGLRRTGKSCRLRWLNYL 71
                     89********************************************97 PP
2Myb_DNA-binding49.78.4e-1677120146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T eE++l+ +++ ++G++ W++Ia+ ++ gRt++++k++w++
       KHN20739.1  77 RGNLTSEEQLLIFELHSKWGNR-WSKIAQQLP-GRTDNEIKNYWRT 120
                      7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.8351971IPR017930Myb domain
SuperFamilySSF466899.73E-2921118IPR009057Homeodomain-like
SMARTSM007171.8E-132373IPR001005SANT/Myb domain
PfamPF002491.4E-142471IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-212578IPR009057Homeodomain-like
CDDcd001673.83E-102671No hitNo description
PROSITE profilePS5129424.6872126IPR017930Myb domain
SMARTSM007177.5E-1476124IPR001005SANT/Myb domain
PfamPF002493.4E-1477120IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-2279125IPR009057Homeodomain-like
CDDcd001673.24E-1181120No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MRLAMSTPSK SIICSSEDDY ELRRGPWSVE EDYLLTHYIA NHGEGRWNLL AIRSGLRRTG  60
KSCRLRWLNY LKPNVKRGNL TSEEQLLIFE LHSKWGNRWS KIAQQLPGRT DNEIKNYWRT  120
RIQKQAIYAK FEDHRRAGFV EFVKGLQMTR CLHKSQESSP SAMSTQDQAI PLPFDGVTVP  180
HYSSFGIGTT PTIQITCHGD LNHLNQHEQN SDSEHHNSSC ISSSESANIP NMSQPFGYTT  240
SQFQALDNCD FGMCLYDGYS IDNNSYDRDA LNLTTTMVAG NLELPVFDCQ TLETNRLNKE  300
FASSTWSMDE L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-25211264108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN20739.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2356960.0AC235696.2 Glycine max clone GM_WBb0070F18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028238584.10.0transcription factor MYB62-like
TrEMBLA0A445JUL40.0A0A445JUL4_GLYSO; Transcription factor MYB62
STRINGGLYMA07G10321.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16393494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25340.12e-62myb domain protein 116
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]