PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN20579.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 723aa    MW: 79248.1 Da    PI: 6.6587
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN20579.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.16.5e-32324380259
                 --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 +DgynWrKYGqK+vkgse+prsYY+Ct+++C+vkkkvers+ +++++ei+Y+g+Hnh 
  KHN20579.1 324 EDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCQVKKKVERSH-EGHITEIIYKGTHNHA 380
                 7****************************************.***************7 PP
2WRKY102.81.9e-32484542159
                 ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 ldDgy+WrKYGqK+vkg+++prsYY+Ct agC+v+k+ver+++d k v++tYeg+Hnh+
  KHN20579.1 484 LDDGYRWRKYGQKVVKGNPNPRSYYKCTNAGCTVRKHVERASHDLKSVITTYEGKHNHD 542
                 59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.9E-28321382IPR003657WRKY domain
SuperFamilySSF1182905.1E-25322382IPR003657WRKY domain
SMARTSM007743.2E-35323381IPR003657WRKY domain
PROSITE profilePS5081122.63324382IPR003657WRKY domain
PfamPF031061.5E-24324379IPR003657WRKY domain
Gene3DG3DSA:2.20.25.809.2E-37469544IPR003657WRKY domain
SuperFamilySSF1182901.96E-28476544IPR003657WRKY domain
PROSITE profilePS5081138.32479544IPR003657WRKY domain
SMARTSM007741.9E-37484543IPR003657WRKY domain
PfamPF031067.4E-25485542IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 723 aa     Download sequence    Send to blast
MAGIDDNVAL TGDWGLASPS PRTFFSRMLE EDSVTRSISE HSGSGRTGDP FSGHREPSEM  60
RKENMKDRAQ DGDSGAQLTD VSFQTEQKPS SRGGLVERMA ARAGFNAPRL NTESIRSTDL  120
SLNSDIQSPY LTIPPGLSPT TLLDSPVFLA NSLAQPSPTT GKFLFMVNGN MRHSELSSDA  180
PEKCKHNGFD DIYTSSFAFK PATDSGSSFY HGAGRKINPT TLPQQSLPGV EVSAQSENSF  240
QCQSVDAVKA QTENKSGLHL QEDFVESPPQ KDNGIKMFSA NQRAFDAVGS GIEHSTPVEE  300
QADEEGDQRV NGDSMAGGVG APSEDGYNWR KYGQKQVKGS EYPRSYYKCT HPNCQVKKKV  360
ERSHEGHITE IIYKGTHNHA KPPPNRRSSI GSVNLHTDMQ VDNPEHVEPH NGGDGEAVDA  420
SSTFSNEEDD QVTHGSVSLG YDGEGDESES KRRKLESYAE LSGATRAIRE PRVVVQTTSE  480
VDILDDGYRW RKYGQKVVKG NPNPRSYYKC TNAGCTVRKH VERASHDLKS VITTYEGKHN  540
HDVPAARASS HVNANASNAV PGQAALQTHV HRPEPSQVHN GIGRLERPSL GSFNLPGRQQ  600
LGPSHGFSFG MNQSMLSNLV MSGLGHAQAK LPVMPVHPFL AAQQQHQQRQ QHQQQQQHQQ  660
QQQQHQQQQQ HQQQQCAAND LGFMLPKGEP NVEAIPEHGG LNLSNGSSVY QEMMSRMPLG  720
PHM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-36312545178Probable WRKY transcription factor 4
2lex_A1e-36312545178Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Regulates WOX8 and WOX9 expression and basal cell division patterns during early embryogenesis. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Required to repolarize the zygote from a transient symmetric state. {ECO:0000269|PubMed:21316593}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN20579.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU0195890.0EU019589.1 Glycine max WRKY59 (WRKY59) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028238450.10.0probable WRKY transcription factor 2
RefseqXP_028238451.10.0probable WRKY transcription factor 2
SwissprotQ9FG771e-173WRKY2_ARATH; Probable WRKY transcription factor 2
TrEMBLA0A0B2QK220.0A0A0B2QK22_GLYSO; Putative WRKY transcription factor 2
STRINGGLYMA06G47880.30.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF95243443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.11e-171WRKY DNA-binding protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  4. Ueda M, et al.
    Transcriptional integration of paternal and maternal factors in the Arabidopsis zygote.
    Genes Dev., 2017. 31(6): p. 617-627
    [PMID:28404632]
  5. Lei R, et al.
    Arabidopsis WRKY2 and WRKY34 transcription factors interact with VQ20 protein to modulate pollen development and function.
    Plant J., 2017. 91(6): p. 962-976
    [PMID:28635025]