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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN19694.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MYB_related | ||||||||
Protein Properties | Length: 79aa MW: 9187.28 Da PI: 9.171 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 31.7 | 3.5e-10 | 9 | 53 | 2 | 44 |
SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 rWT +E + + +a + + ++ +W Iar +g g+t+++++ ++ KHN19694.1 9 SRWTVQENKAFERALAVYDKDtpnRWCNIARAVG-GKTPEEVRRHY 53 69********************************.**********9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 9.743 | 6 | 61 | IPR017884 | SANT domain |
Gene3D | G3DSA:1.10.10.60 | 3.3E-6 | 6 | 56 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.6E-11 | 7 | 59 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.6E-8 | 9 | 53 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 5.61E-14 | 9 | 65 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.84E-9 | 10 | 57 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 79 aa Download sequence Send to blast |
MMSSSSSTSR WTVQENKAFE RALAVYDKDT PNRWCNIARA VGGKTPEEVR RHYDRLVEDI 60 RRIESGQVPF PIYRNLQDG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 2e-33 | 1 | 74 | 1 | 74 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes dorsal identity. {ECO:0000269|PubMed:15790677}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN19694.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by both CYC and DICH. {ECO:0000269|PubMed:15790677, ECO:0000269|PubMed:16236768}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003554832.1 | 5e-54 | transcription factor RADIALIS | ||||
Refseq | XP_028219129.1 | 5e-54 | transcription factor RADIALIS-like | ||||
Swissprot | Q58FS3 | 3e-33 | RAD_ANTMA; Transcription factor RADIALIS | ||||
TrEMBL | A0A445FAA9 | 1e-52 | A0A445FAA9_GLYSO; Transcription factor RADIALIS | ||||
STRING | GLYMA19G00730.2 | 2e-53 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF154 | 34 | 280 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75250.1 | 5e-32 | RAD-like 6 |
Publications ? help Back to Top | |||
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