PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

HD-ZIP

Protein Properties

Length: 323aa MW: 36589.2 Da PI: 4.4454

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN19374.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56.6	4.4e-18	88	141	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eq++ Le+ F +++++ e++ LAk+lgL+ rqV +WFqNrRa++k KHN19374.1 88 KKRRLSVEQVKFLEKSFDEENKLEPERKIWLAKELGLQPRQVAIWFQNRRARWK 141 56689************************************************9 PP
2	HD-ZIP_I/II	127.7	5e-41	87	179	1	93
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 ekkrrls eqvk+LE+sF+ee+kLeperK la+eLglqprqva+WFqnrRAR+ktkq+Ekdy++L+++y+ lk++ ++L +e+++L++e+++ KHN19374.1 87 EKKRRLSVEQVKFLEKSFDEENKLEPERKIWLAKELGLQPRQVAIWFQNRRARWKTKQMEKDYDSLQASYNDLKANYDNLLREKDKLKAEVAR 179 69**************************************************************************************99875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.27E-19	75	145	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.989	83	143	IPR001356	Homeobox domain
SMART	SM00389	5.6E-19	86	147	IPR001356	Homeobox domain
CDD	cd00086	4.69E-18	88	144	No hit	No description
Pfam	PF00046	2.6E-15	88	141	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	7.1E-19	90	151	IPR009057	Homeodomain-like
PRINTS	PR00031	9.0E-5	114	123	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	118	141	IPR017970	Homeobox, conserved site
PRINTS	PR00031	9.0E-5	123	139	IPR000047	Helix-turn-helix motif
Pfam	PF02183	3.5E-16	143	184	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 323 aa Download sequence Send to blast
MAAGTVFCAA ASNLTTTTFL HNQTPPSTSS QPPLDSLFLS ASSPFLGSRS IVSFGDVQGG 60 KGCNDSFFRP YDENGDEDMD EYFHQPEKKR RLSVEQVKFL EKSFDEENKL EPERKIWLAK 120 ELGLQPRQVA IWFQNRRARW KTKQMEKDYD SLQASYNDLK ANYDNLLREK DKLKAEVARL 180 TEKVLGREKN ESHLEQAETN GLQEPLHKSL VDSASEGEGS KVTFEACKQE DISSAKSDIF 240 DSSESPQYTD GVHSALLETG DSSYVFEPDR SDVSQDEEDN LSKTLLPHYI FPKLEDVDYS 300 DPPHGSCNFG IPEEDQAIWS WPY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	135	143	RRARWKTKQ

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN19374.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY823671	0.0	AY823671.1 Glycine max HDZip I protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001237881.2	0.0	HDZip I protein
Refseq	XP_028237206.1	0.0	homeobox-leucine zipper protein HAT5-like
TrEMBL	A0A445KBU2	0.0	A0A445KBU2_GLYSO; Homeobox-leucine zipper protein HAT5
TrEMBL	I1KCP4	0.0	I1KCP4_SOYBN; Uncharacterized protein
STRING	GLYMA06G20230.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1500	34	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01470.1	1e-45	homeobox 1

Publications ? help Back to Top
Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933]