PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

Dof

Protein Properties

Length: 353aa MW: 38695.1 Da PI: 7.3958

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN19304.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126	1.2e-39	55	113	4	62
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 alkcprC+st+tkfCyynnyslsqPryfCk+CrryWtkGG+lrn+PvGgg+rknkk+s KHN19304.1 55 LALKCPRCESTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKVS 113 5789****************************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	9.0E-29	47	107	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.8E-33	56	111	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.059	57	111	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	59	95	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence Send to blast
MGLSSLHVCM DSSDHWLQGT IHEESGMDSS SSPSGDMLTC SRPMIERRLR PPHDLALKCP 60 RCESTHTKFC YYNNYSLSQP RYFCKTCRRY WTKGGTLRNI PVGGGCRKNK KVSAKKSNND 120 HQLVNNNNSP TQPPPSSSYH HHSHPKDLQL SSFPDVQFSH LSNLLGTNIA NPSFMEGKYG 180 IGMIENPRPI DFMMESKLEG IIGSGSSSRN NFDFFGNSDM SMGMTSVGLG DMNSTQNGLP 240 PNFHHHGLSA FGGMSMSMSL DHGNNNNNSG GNGGSNNYLM DSCQRLMLPY ASSNEDHNAP 300 IDVKPNPKQL LSLEWQDQGC SDAGKDSFGY LNGPGSWTGM MNGYGSSTTN PLV

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence Send to blast

MGLSSLHVCM DSSDHWLQGT IHEESGMDSS SSPSGDMLTC SRPMIERRLR PPHDLALKCP  60
RCESTHTKFC YYNNYSLSQP RYFCKTCRRY WTKGGTLRNI PVGGGCRKNK KVSAKKSNND  120
HQLVNNNNSP TQPPPSSSYH HHSHPKDLQL SSFPDVQFSH LSNLLGTNIA NPSFMEGKYG  180
IGMIENPRPI DFMMESKLEG IIGSGSSSRN NFDFFGNSDM SMGMTSVGLG DMNSTQNGLP  240
PNFHHHGLSA FGGMSMSMSL DHGNNNNNSG GNGGSNNYLM DSCQRLMLPY ASSNEDHNAP  300
IDVKPNPKQL LSLEWQDQGC SDAGKDSFGY LNGPGSWTGM MNGYGSSTTN PLV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN19304.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	DQ857264	0.0	DQ857264.1 Glycine max Dof14 mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003527017.1	0.0	dof zinc finger protein DOF5.6
Refseq	XP_028237115.1	0.0	dof zinc finger protein DOF5.6-like
TrEMBL	A0A445KBG4	0.0	A0A445KBG4_GLYSO; Dof zinc finger protein DOF5.6 isoform A
TrEMBL	I1KCF8	0.0	I1KCF8_SOYBN; Uncharacterized protein
STRING	GLYMA06G19330.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5092	34	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62940.1	5e-51	Dof family protein

Publications ? help Back to Top
Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933]