PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN19208.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 253aa    MW: 29048.2 Da    PI: 4.865
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN19208.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY955.2e-3058116259
                 --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                 +D ++WrKYGqK++kgs++pr+YY+C+++ gC++kk+ver+++d ++++itY+++Hnh+
  KHN19208.1  58 SDFWSWRKYGQKPIKGSPYPRGYYKCSTSkGCSAKKQVERCRTDASMLIITYTSTHNHP 116
                 699***********************9988****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.5E-3150118IPR003657WRKY domain
PROSITE profilePS5081131.86952118IPR003657WRKY domain
SuperFamilySSF1182906.15E-2655118IPR003657WRKY domain
SMARTSM007743.2E-3557117IPR003657WRKY domain
PfamPF031063.6E-2559116IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MDNNTSACAY PQLESEEASS EHKSETQTSK KRKMVEKTVV AVRVGEKVGK LKNEGLPSDF  60
WSWRKYGQKP IKGSPYPRGY YKCSTSKGCS AKKQVERCRT DASMLIITYT STHNHPCPTP  120
ITTKSTTTKE EDQEHIELEE EEEQRDNNNN KPSDEVTNEE NFHYLQSPIR CSSQDIIIEQ  180
EDPFKLNTEK SHDRMDLLLE EEPLCFAQLK NLSASKNEEL DFFDELEELP MSSSLLHFTR  240
NIFSDERIPV GPS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B1e-21581191780Disease resistance protein RRS1
5w3x_D1e-21581191780Disease resistance protein RRS1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN19208.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU0195770.0EU019577.1 Glycine max WRKY41 (WRKY41) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001348303.10.0WRKY transcription factor 41
RefseqXP_028226322.10.0probable WRKY transcription factor 35
TrEMBLA0A0B2QH090.0A0A0B2QH09_GLYSO; Putative WRKY transcription factor 35
TrEMBLI1JQS90.0I1JQS9_SOYBN; Uncharacterized protein
STRINGGLYMA03G37870.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF97083241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.14e-36WRKY DNA-binding protein 35
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]