PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN19014.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 69aa MW: 7684.13 Da PI: 11.076 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 81.5 | 5.5e-26 | 9 | 58 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 k+i++ + rqvtfskR+ g++KKA ELS LCdae+a+i+fs+ gkl++y KHN19014.1 9 KKIDDVTARQVTFSKRKSGLFKKARELSLLCDAEIALIVFSPGGKLFDYG 58 689********************************************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 7.5E-37 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 28.174 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.0E-25 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.31E-26 | 3 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 3.64E-33 | 3 | 60 | No hit | No description |
Pfam | PF00319 | 1.7E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.0E-25 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.0E-25 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 69 aa Download sequence Send to blast |
MVRRKIPIKK IDDVTARQVT FSKRKSGLFK KARELSLLCD AEIALIVFSP GGKLFDYGSS 60 RLPFPAGSK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3mu6_A | 4e-19 | 3 | 63 | 2 | 62 | Myocyte-specific enhancer factor 2A |
3mu6_B | 4e-19 | 3 | 63 | 2 | 62 | Myocyte-specific enhancer factor 2A |
3mu6_C | 4e-19 | 3 | 63 | 2 | 62 | Myocyte-specific enhancer factor 2A |
3mu6_D | 4e-19 | 3 | 63 | 2 | 62 | Myocyte-specific enhancer factor 2A |
5f28_A | 5e-19 | 1 | 62 | 1 | 62 | MEF2C |
5f28_B | 5e-19 | 1 | 62 | 1 | 62 | MEF2C |
5f28_C | 5e-19 | 1 | 62 | 1 | 62 | MEF2C |
5f28_D | 5e-19 | 1 | 62 | 1 | 62 | MEF2C |
6byy_A | 5e-19 | 1 | 60 | 1 | 60 | MEF2 CHIMERA |
6byy_B | 5e-19 | 1 | 60 | 1 | 60 | MEF2 CHIMERA |
6byy_C | 5e-19 | 1 | 60 | 1 | 60 | MEF2 CHIMERA |
6byy_D | 5e-19 | 1 | 60 | 1 | 60 | MEF2 CHIMERA |
6bz1_A | 5e-19 | 1 | 60 | 1 | 60 | MEF2 CHIMERA |
6bz1_B | 5e-19 | 1 | 60 | 1 | 60 | MEF2 CHIMERA |
6bz1_C | 5e-19 | 1 | 60 | 1 | 60 | MEF2 CHIMERA |
6bz1_D | 5e-19 | 1 | 60 | 1 | 60 | MEF2 CHIMERA |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | MADS-box transcription factor that acts with AGL42 and AGL72 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1. {ECO:0000269|PubMed:21609362}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN19014.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015038 | 1e-60 | AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003541785.1 | 5e-35 | MADS-box protein JOINTLESS isoform X2 | ||||
Refseq | XP_006594670.1 | 9e-35 | MADS-box protein SVP isoform X1 | ||||
Refseq | XP_006594672.1 | 5e-35 | MADS-box protein JOINTLESS isoform X2 | ||||
Refseq | XP_014621339.1 | 5e-35 | MADS-box protein JOINTLESS isoform X2 | ||||
Refseq | XP_028188416.1 | 9e-35 | MADS-box protein SVP-like isoform X1 | ||||
Refseq | XP_028188417.1 | 5e-35 | MADS-box protein JOINTLESS-like isoform X2 | ||||
Refseq | XP_028188418.1 | 5e-35 | MADS-box protein JOINTLESS-like isoform X2 | ||||
Swissprot | Q9LT93 | 8e-25 | AGL71_ARATH; MADS-box protein AGL71 | ||||
TrEMBL | A0A0B2QFR7 | 3e-41 | A0A0B2QFR7_GLYSO; MADS-box protein AGL24 | ||||
STRING | GLYMA13G33031.1 | 2e-34 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF119 | 33 | 360 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51870.2 | 2e-27 | AGAMOUS-like 71 |
Publications ? help Back to Top | |||
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