 |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | KHN18941.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
| Family | ARF | ||||||||
| Protein Properties | Length: 982aa MW: 109748 Da PI: 7.6768 | ||||||||
| Description | ARF family protein | ||||||||
| Gene Model |
|
||||||||
| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | B3 | 76.6 | 2.8e-24 | 149 | 250 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93
f+k+lt sd++++g +++p++ ae++ + +++ s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv+ ++L +gD v+F + +++el+
KHN18941.1 149 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyS-QQRPSQELVAKDLHGLEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFL--RGNDGELR 244
99****************************963.3445679************************************************..4489999* PP
EEEE-S CS
B3 94 vkvfrk 99
++++r+
KHN18941.1 245 LGIRRA 250
***996 PP
| |||||||
| 2 | Auxin_resp | 115.4 | 5.2e-38 | 275 | 356 | 1 | 82 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82
+++a+st+++F+v+YnPr s+seF+++v+k++++l++++svGmRf+m+feted++ rr++G+++g+sd+dpvrW +SkWr+L
KHN18941.1 275 VVNALSTRCAFSVCYNPRFSSSEFIIPVHKFLESLDCSYSVGMRFRMRFETEDAADRRFTGLIAGISDVDPVRWLGSKWRCL 356
6899*****************************************************************************9 PP
| |||||||
| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF101936 | 4.71E-42 | 142 | 252 | IPR015300 | DNA-binding pseudobarrel domain |
| Gene3D | G3DSA:2.40.330.10 | 7.9E-40 | 144 | 251 | IPR015300 | DNA-binding pseudobarrel domain |
| CDD | cd10017 | 4.86E-22 | 147 | 249 | No hit | No description |
| SMART | SM01019 | 4.3E-23 | 149 | 251 | IPR003340 | B3 DNA binding domain |
| PROSITE profile | PS50863 | 13.366 | 149 | 251 | IPR003340 | B3 DNA binding domain |
| Pfam | PF02362 | 2.1E-22 | 149 | 250 | IPR003340 | B3 DNA binding domain |
| Pfam | PF06507 | 1.0E-32 | 276 | 356 | IPR010525 | Auxin response factor |
| Pfam | PF03094 | 3.7E-19 | 721 | 787 | IPR004326 | Mlo-related protein |
| Pfam | PF03094 | 4.3E-35 | 787 | 903 | IPR004326 | Mlo-related protein |
| SuperFamily | SSF48340 | 4.18E-5 | 900 | 969 | IPR003191 | Guanylate-binding protein, C-terminal |
| Pfam | PF02841 | 7.0E-6 | 900 | 968 | IPR003191 | Guanylate-binding protein, C-terminal |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0006952 | Biological Process | defense response | ||||
| GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
| GO:0005634 | Cellular Component | nucleus | ||||
| GO:0016021 | Cellular Component | integral component of membrane | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| GO:0003924 | Molecular Function | GTPase activity | ||||
| GO:0005525 | Molecular Function | GTP binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 982 aa Download sequence Send to blast |
MGLIDLNTTE DDEAAPLSAS SSHSGISTSA STLVVSPPPS VCLELWHACA GPLISLPKRG 60 SVVVYLPQGH FEHVQDFPVN AFDIPPHVFC RVLDVKLHAE EGSDEVYCQV LLVPESEQVE 120 HSLREGEIVA DGEEEDTGAM VKSTTPHMFC KTLTASDTST HGGFSVPRRA AEDCFPPLDY 180 SQQRPSQELV AKDLHGLEWR FRHIYRGQPR RHLLTTGWSA FVNKKKLVSG DAVLFLRGND 240 GELRLGIRRA AQLKWAGSFA VPSGQQLNPA TLMDVVNALS TRCAFSVCYN PRFSSSEFII 300 PVHKFLESLD CSYSVGMRFR MRFETEDAAD RRFTGLIAGI SDVDPVRWLG SKWRCLLVRW 360 DDIEAARHNR VSPWEIEPSG SASNSSNLMA AGLKRNRIEM TSAKLEFPNP NGIQTSDFGE 420 SLRFRKVLQG QEILGVNTPP FDGINAQSPW LYELGRCYPG SNCSGIPPTG NNIRVPHPAS 480 DFSCNGIGFS ESFRFQKVLQ GQEILPSQPY GRALSIEEAR ANGRYGFYDG CQLLNSRNGW 540 SAQMHDNASH LHASVTPAQV SSPSSVLMFQ QAVNPVSNCD YSINKCNKEM EGRIHYQGLY 600 TSEMKGRTLA SSPSDDLIVS RRAPEGASSI GMFDVHNQLG SSQLHESVSA LRSSQKLVSS 660 CKSSCRLFGF SLTEDTHVAN EEVSASTITL PLSSGPSFTR LVEDEFHPGH SHPSKAVGSN 720 CTKYFKRKRR QSLSEALEKI RTELMLLGFT SLLLTVSEKS IANICIPKGA GETLIPCASI 780 TFDDAKKQNV QSREGVREQQ YFIFYLARCH VVSSFLTFGL GLAKIRRSES WEGETRTLEY 840 QFAYDPRRYQ LTGQTPFGKR HLNYWSNNSV MYWPVCLVRQ FYRSVPRVDY FTLRHGFIMD 900 YKKNAYIEAD LQCSNAVQSM EKRLRAACNA SDSKIDNVAK VLDALLCEYE KSIQAPGKWQ 960 KLAVFLQQRF VFRYCFQLFL FF |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 4ldy_A | 1e-110 | 40 | 385 | 18 | 361 | Auxin response factor 1 |
| 4ldy_B | 1e-110 | 40 | 385 | 18 | 361 | Auxin response factor 1 |
| Search in ModeBase | ||||||
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Involved in the establishment or elaboration of tissue patterning during gynoecial development. {ECO:0000269|PubMed:10952886, ECO:0000269|PubMed:12036261}. | |||||
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | KHN18941.1 |
| Regulation -- Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | INDUCTION: Negatively regulated by AHL21/GIK. {ECO:0000269|PubMed:19956801}. | |||||
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_028204247.1 | 0.0 | auxin response factor 3-like | ||||
| Swissprot | O23661 | 0.0 | ARFC_ARATH; Auxin response factor 3 | ||||
| TrEMBL | A0A0B2QBF3 | 0.0 | A0A0B2QBF3_GLYSO; Auxin response factor | ||||
| STRING | GLYMA15G08540.2 | 0.0 | (Glycine max) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Fabids | OGEF4576 | 33 | 55 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT2G33860.1 | 0.0 | ARF family protein | ||||
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
Supported By
|