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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN18728.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | C2H2 | ||||||||
Protein Properties | Length: 288aa MW: 31439 Da PI: 4.3862 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.7 | 0.00038 | 262 | 285 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y+C+ C++sF++ + L +H + H KHN18728.1 262 YSCKPCSRSFKTEDALSSHNKAkH 285 89*****************88766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 5.4E-4 | 262 | 286 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 11.635 | 262 | 288 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 264 | 285 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 288 aa Download sequence Send to blast |
MEFWGVEVKS GESLKVDPGD DKIIHLSNAC LGDVTKDKEG LPVALYVKFG NQKLVLGTLS 60 SEAFPQISYD LVFEKEFELS HNWKHGSVFF TGFKAQSQSD TDNDEDSDDF DEDIPVSAAN 120 GKPEIEVKNG IKPDANEAKQ KKIANGEDED SSESESDDDS SEDQLTANGD IESSEGDDDS 180 DDEEEGDDES DEETPKKIEA SNKRGIDSSK KTPVPVKKTK FVTPQKTDSK NVVHVATPHP 240 SKQTGKATAN NKQQTPKSGG DYSCKPCSRS FKTEDALSSH NKAKHSTK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN18728.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT095167 | 0.0 | BT095167.1 Soybean clone JCVI-FLGm-6J20 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001240859.1 | 0.0 | histone deacetylase HDT1-like | ||||
Refseq | XP_028225960.1 | 0.0 | histone deacetylase HDT1-like | ||||
TrEMBL | A0A445LE36 | 0.0 | A0A445LE36_GLYSO; Histone deacetylase HDT1 | ||||
TrEMBL | C6TC87 | 0.0 | C6TC87_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA03G34850.3 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1025 | 30 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G44750.2 | 4e-33 | histone deacetylase 3 |
Publications ? help Back to Top | |||
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