PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN18717.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family Trihelix
Protein Properties Length: 456aa    MW: 52264.1 Da    PI: 6.4708
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN18717.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix73.43.8e-23115213186
    trihelix   1 rWtkqevlaLiearremeerlrrgk............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqle 86 
                 +Wt+ +v+ Li a+ +++++ +++             +kk++W++vs  m+e+g+ +sp+qC++k+++lnkryk+++++ +k+ +++++++  ++d ++
  KHN18717.1 115 KWTDTMVKFLIMAVYYIGDEAGSEGtdptkkkasgllQKKGKWKSVSGGMMEKGYYVSPQQCEDKFNDLNKRYKRVNDILGKGtACRVVENQTLLDTMD 213
                 7**************9998888643356677889999**********************************************55999**999999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.6E-20113238No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 456 aa     Download sequence    Send to blast
LMEPNALGGG IFPNISSGLL GVENPLQQQP NLQNQQNPHP LHHLQMVSYT TNHDTDTHHQ  60
QPPPQQSIKH GYNFSATKSN KSQITLSDED EPVFTAEDNS SGDPKRKVSP WHRMKWTDTM  120
VKFLIMAVYY IGDEAGSEGT DPTKKKASGL LQKKGKWKSV SGGMMEKGYY VSPQQCEDKF  180
NDLNKRYKRV NDILGKGTAC RVVENQTLLD TMDLSPKMKE EVRKLLNSKH LFFREMCAYH  240
NSCGHNNNNN CGSTSNVQQS TDQPLHQHNH QQQQCLHSSE NGVGSLRMLK EDEDEDIEDD  300
DSDEFSDEDE DESGEGGSRG MEEDENDHVM RKRARNKGGF GVSSISSQMM QQLNGEVSGV  360
LQDGGKSAWE KKQWMKKKVV QLEEQQVSYQ MQAFEMEKQR LKWARFSSKK EREMEKDKLQ  420
NERKRLEIER MVLLLRHKEL ELVNVQQQHQ QQHSST
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN18717.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0973680.0BT097368.1 Soybean clone JCVI-FLGm-21N20 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001242801.20.0uncharacterized LOC100808934
RefseqXP_028225939.10.0transcription initiation factor TFIID subunit 7-like
TrEMBLA0A445LDV90.0A0A445LDV9_GLYSO; Uncharacterized protein
TrEMBLI1JPV40.0I1JPV4_SOYBN; Uncharacterized protein
STRINGGLYMA03G34730.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48203457
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10040.19e-63sequence-specific DNA binding transcription factors
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]