PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN18666.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family M-type_MADS
Protein Properties Length: 267aa    MW: 30373 Da    PI: 7.5015
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN18666.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF51.81e-161051243
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                +i n+  r  t+ kR++g+lKK eELS+LC++e++ i+++++
  KHN18666.1 10 FIGNDAARRATYKKRKKGMLKKVEELSTLCGIEACAIVYGHN 51
                799*************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.3E-21160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.077151IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.96E-22294IPR002100Transcription factor, MADS-box
CDDcd002661.32E-18285No hitNo description
PRINTSPR004042.4E-8323IPR002100Transcription factor, MADS-box
PfamPF003192.5E-151051IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-82338IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-83859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MTRKKVKLAF IGNDAARRAT YKKRKKGMLK KVEELSTLCG IEACAIVYGH NDPEPEVWPS  60
HWGVQRVVEK LRTMPELEQR KKMVNQEGFI GQKILKGNEK VMKLMKDNRE KEITMFLFQC  120
LNAGRIQPDN NMTTADLNVL SSLIDQNLKD ISKRLETLSV NEMTPNQPLM QTPAYQPLVE  180
APSYNQSHLQ TPAYQPQTQT PALAVPKNEE MALLNYGHGL DMSDNSMQRL LFMDLLNSNG  240
DETIMPPFGD ANLQLQNDFW PDLGLLP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVKLAFIGNDAARRATYKKRK
22125KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN18666.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028212416.10.0agamous-like MADS-box protein AGL80
SwissprotQ9FJK34e-49AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLA0A0B2QAN70.0A0A0B2QAN7_GLYSO; Agamous-like MADS-box protein AGL80
STRINGGLYMA18G05916.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1946255
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.11e-46AGAMOUS-like 80
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  2. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]