PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN18665.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 432aa    MW: 48612.4 Da    PI: 6.2136
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN18665.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.64.6e-11381430147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      + +W+  E+e l  +vk++G g+W+tI +      ++R++ ++k++w++ 
       KHN18665.1 381 KRKWSSLEEETLRAGVKMFGEGNWATIRSFYSnifENRSGVDLKDKWRNM 430
                      569*********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.9E-14374432IPR009057Homeodomain-like
PROSITE profilePS5129417.487376432IPR017930Myb domain
SuperFamilySSF466895.3E-15377431IPR009057Homeodomain-like
SMARTSM007173.4E-6380432IPR001005SANT/Myb domain
PfamPF002491.4E-8381430IPR001005SANT/Myb domain
CDDcd116602.91E-18382432No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MNSDISRWVM EFLLRSSVPD SLIQKTLTAL PLSPAEPRLK KNLLLRTLQT LLRRATLSET  60
ALDILEDLSP ISNVNTARTA QSPWSAPSST SPRALTLSMA KDALGEDSKE TRERLAGLNS  120
RRDAMNEVRV YLKEAWEMMG PSFLETVAAT EKKNDEGACD NGSGNGNDDD HDDGACMEDV  180
AMHYENQEPL EESVDANQEV GGSDLTPQRD KAILKRNPQL KHKHSAFRAS HKGRGIKISS  240
PEEVESTKPW RKHDPVPSAE VKKIRESLKS SSSELQALVN DPLPDALHIS DVVRSKLATS  300
DTKIEPPIEN QHEDVEVQDP DVCLSIVPFQ PNDVNLGKKS SVHCSNIHQP SLMERNRSAR  360
TFEWEDSIDN SQQARQPRRR KRKWSSLEEE TLRAGVKMFG EGNWATIRSF YSNIFENRSG  420
VDLKDKWRNM IR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1376380PRRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN18665.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003552913.10.0uncharacterized protein LOC100791258 isoform X1
RefseqXP_028214821.10.0uncharacterized protein LOC114396834 isoform X1
RefseqXP_028214822.10.0uncharacterized protein LOC114396834 isoform X1
RefseqXP_028214823.10.0uncharacterized protein LOC114396834 isoform X1
TrEMBLA0A0B2QBN80.0A0A0B2QBN8_GLYSO; Telomeric repeat-binding factor 1
STRINGGLYMA18G05900.30.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28243260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49850.11e-09telomere repeat binding factor 3
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]