PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN18560.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

M-type_MADS

Protein Properties

Length: 53aa MW: 6030.38 Da PI: 10.9824

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN18560.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	73.7	1.5e-23	10	53	2	45
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 + e+ snr+vt+skR+ gi+KKA+ELS+LCd+++ +++fs+tgk KHN18560.1 10 KLESISNRHVTYSKRKSGIIKKAKELSILCDIDIILLMFSPTGK 53 67999*************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	3.7E-23	1	53	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	5.49E-22	1	53	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	24.53	1	53	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.1E-19	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	4.8E-20	12	53	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.1E-19	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.1E-19	38	53	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 53 aa Download sequence Send to blast
MGRVKLKIKK LESISNRHVT YSKRKSGIIK KAKELSILCD IDIILLMFSP TGK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that forms a heterodimer with the MADS-box protein AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269\|PubMed:19211705}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN18560.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC235246	2e-83	AC235246.1 Glycine max strain Williams 82 clone GM_WBb0033G13, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025982168.1	4e-28	LOW QUALITY PROTEIN: agamous-like MADS-box protein AGL65
Swissprot	Q7X9I0	2e-25	AGL65_ARATH; Agamous-like MADS-box protein AGL65
TrEMBL	A0A445G4U3	3e-28	A0A445G4U3_GLYSO; Agamous-like MADS-box protein AGL65 isoform B
STRING	GLYMA05G00960.1	2e-28	(Glycine max)
STRING	GLYMA17G10941.1	7e-27	(Glycine max)
STRING	XP_007155298.1	3e-26	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF119	33	360

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18750.1	1e-16	AGAMOUS-like 65

Publications ? help Back to Top
Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933] Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]