PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN17790.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 335aa    MW: 36614.9 Da    PI: 7.7756
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN17790.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY89.82.2e-28127185259
                 --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                  Dg++WrKYGqK  kg+++pr+YYrC +   Cpv+k+v+r++ed++vv++tYeg+Hnh+
  KHN17790.1 127 GDGCQWRKYGQKISKGNPCPRAYYRCNMGtACPVRKQVQRCSEDESVVITTYEGNHNHS 185
                 69**************************98****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-31111187IPR003657WRKY domain
SuperFamilySSF1182901.44E-26119187IPR003657WRKY domain
PROSITE profilePS5081129.264121187IPR003657WRKY domain
SMARTSM007741.4E-32126186IPR003657WRKY domain
PfamPF031067.2E-25128184IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MEGKVALKKL LEVQKKAHVN STDALNWTEE PSIKNTLGST LLSLSLNNLE PPQNHEQQHL  60
NQRDSRQEDM EKPVLSSCSQ FLNTEGKFNK QVTTSQEAKT IEEQAFEASC KKARVSVRAR  120
SESSLMGDGC QWRKYGQKIS KGNPCPRAYY RCNMGTACPV RKQVQRCSED ESVVITTYEG  180
NHNHSLPPAA KSMASTTSAA LKMFLSGSTS SSHGSTYSYS NSDLFSPLFT STYYPSASSS  240
CPTINLDFTQ TSKDNLKFPS VISSNHLQPF PLSLHGQPQQ SEGILPSEKN LALVDVVSAA  300
ITNDPSLKAA LEAAVSSIIG DSQNINNHSQ SLPTF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-21117187877Probable WRKY transcription factor 4
2ayd_A5e-21113189176WRKY transcription factor 1
2lex_A4e-21117187877Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN17790.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150342e-32AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003550582.10.0WRKY transcription factor 6 isoform X1
RefseqXP_028211045.10.0WRKY transcription factor 6-like isoform X1
TrEMBLA0A445G1Q50.0A0A445G1Q5_GLYSO; WRKY transcription factor 42 isoform A
TrEMBLI1MS010.0I1MS01_SOYBN; Uncharacterized protein
STRINGGLYMA17G04710.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF139451122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04450.18e-41WRKY family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]