PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN17205.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 308aa    MW: 34324.2 Da    PI: 6.8632
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN17205.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.21.4e-161462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W++eEd  l+++v+ +G+g +W + +++ g++R++k+c++rw++yl
       KHN17205.1 14 RGPWSPEEDATLKNYVETHGTGgNWIALPKKAGLRRCGKSCRLRWLNYL 62
                     89*********************************************97 PP
2Myb_DNA-binding40.75.4e-1369117246
                      SSS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGgg.....tWktIartmgkgRtlkqcksrwqk 46 
                      g +T+eEd ++  + +++G++      W++Ia++++ gRt++++k++w++
       KHN17205.1  69 GGFTEEEDNIICTLYAEMGSRqvfpkLWSAIASKLP-GRTDNDVKNYWNT 117
                      569*********************************.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129420.63966IPR017930Myb domain
SuperFamilySSF466891.24E-2511115IPR009057Homeodomain-like
SMARTSM007174.6E-121364IPR001005SANT/Myb domain
PfamPF002491.3E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-251569IPR009057Homeodomain-like
CDDcd001673.01E-91662No hitNo description
PROSITE profilePS5129414.79567123IPR017930Myb domain
SMARTSM007171.8E-1167121IPR001005SANT/Myb domain
PfamPF002498.4E-1269117IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-2270123IPR009057Homeodomain-like
CDDcd001677.31E-1171119No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MGRAPCCDKA NVKRGPWSPE EDATLKNYVE THGTGGNWIA LPKKAGLRRC GKSCRLRWLN  60
YLRPDIKHGG FTEEEDNIIC TLYAEMGSRQ VFPKLWSAIA SKLPGRTDND VKNYWNTKLK  120
KKIMAGKVTL KTLTDNDTLP SISTPSLTNN QNVKTSQNSP FPSSQNQNSP PLDANNTFSI  180
SEKSIISFDQ THHGLYSPQV MDVVSQIGAN SRIPNYNNNN NPVVSLSQEG SSSISDSSSI  240
AMNNKNVSQP EQHANDDYES MEMLMDFGFG FPYDFANGPN CHYERVGELA PSSYPEWVDF  300
SYADIKPH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-22141237108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN17205.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150363e-61AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006596010.10.0transcription factor RAX2
RefseqXP_028199242.10.0transcription factor RAX2-like
TrEMBLA0A0R0GBH50.0A0A0R0GBH5_SOYBN; Uncharacterized protein
TrEMBLA0A445H3R50.0A0A445H3R5_GLYSO; Transcription factor RAX3
STRINGGLYMA14G10483.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65790.15e-71myb domain protein 68
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]