PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN17151.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 1551aa    MW: 172958 Da    PI: 6.8361
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN17151.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.50.0004614361461123
                  EEET..TTTEEESSHHHHHHHHHH.T CS
     zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt.H 23  
                  +kC    C +sF++k +L  H r+ +
  KHN17151.1 1436 HKCDldGCQMSFKTKAELLLHKRNlC 1461
                  799999****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005452.6E-121555IPR003349JmjN domain
PROSITE profilePS5118313.731657IPR003349JmjN domain
PfamPF023753.0E-151750IPR003349JmjN domain
PROSITE profilePS5118432.911293476IPR003347JmjC domain
SuperFamilySSF511978.24E-23293472No hitNo description
SMARTSM005581.8E-37293476IPR003347JmjC domain
PfamPF023734.5E-32326438IPR003347JmjC domain
Gene3DG3DSA:3.30.160.604.3E-414271458IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003558.814361458IPR015880Zinc finger, C2H2-like
SMARTSM003550.6714591483IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.0514591488IPR007087Zinc finger, C2H2
SuperFamilySSF576678.86E-614601496No hitNo description
PROSITE patternPS00028014611483IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.6E-514611487IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene3DG3DSA:3.30.160.601.9E-1014881513IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.001614891513IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.0314891518IPR007087Zinc finger, C2H2
PROSITE patternPS00028014911513IPR007087Zinc finger, C2H2
SuperFamilySSF576671.06E-1014991549No hitNo description
Gene3DG3DSA:3.30.160.601.6E-1015141542IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.6615191545IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.26315191550IPR007087Zinc finger, C2H2
PROSITE patternPS00028015211545IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0009826Biological Processunidimensional cell growth
GO:0032259Biological Processmethylation
GO:0033169Biological Processhistone H3-K9 demethylation
GO:0040010Biological Processpositive regulation of growth rate
GO:0045815Biological Processpositive regulation of gene expression, epigenetic
GO:0048577Biological Processnegative regulation of short-day photoperiodism, flowering
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0055114Biological Processoxidation-reduction process
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0008168Molecular Functionmethyltransferase activity
GO:0016491Molecular Functionoxidoreductase activity
GO:0046872Molecular Functionmetal ion binding
GO:0071558Molecular Functionhistone demethylase activity (H3-K27 specific)
Sequence ? help Back to Top
Protein Sequence    Length: 1551 aa     Download sequence    Send to blast
MGSVEIPNWL KGLPLAPEFR PTDTEFADPI AYISKIEKEA ANFGICKIIP PFPKPSKKYV  60
FSNLNRSLLK CPDFGPDNSS LGVCNSSKTS SGDGSSDGVL RAVFTTRHQE LGQSQSVKKA  120
KGTVQNPLSG VHKQVWQSGE AYTLEQFESK SKSFAKSVLG SVKDVSPLVI ESMFWKATLE  180
KPIYVEYAND VPGSAFEESK GQFHYSHRRQ RKRTYYKSRL DSSDCKQTET GCVRDTQTDE  240
TKVASVQSHS DTCLQMAKSS TTVSTFSSND DSQSSKEKSS DASNEMQGTA GWKLSNSPWN  300
LQVIARSSGS LTRFMPDDIP GVTSPMVYIG MLFSWFAWHV EDHELHSMNF LHTGSSKTWY  360
AVPGDYAFAF EEVIRTEGYS GNIDHLAALK LLGEKTTLLS PEVIVASGIP CCRLTQHPGE  420
FVVTFPRAYH VGFSHGLSAI CATEICLTCG FNCGEAANFG TPQWLRVAKE AAVRRAAMNY  480
LPMLSHQQLL YLLTMSFISR VPRTLLPGVR SSRLRDRQKE EREFLVKQAF IEDMLQENKL  540
LSILLGKEAT KKAVLWNADL LPDSSKDFQL PDLTSTTGSS MAHMSNISSA EKSGHYLLDE  600
MSLYMENLTN LDLGGDDLPC HFQTDSGALA CVGCGILGFP FMTVIQPTEK LIMELLPDNH  660
LVQVSSPDST ACVHSSISRD LSVSELSSVK ELPDQSLNKC NKCWNTSSKF LRPRIFCLEH  720
AVQIFEMLQS KGGANVLIIC HSDYQKIKAH ARAVAEEIHS AFDYNEVPLD TASPENLTLI  780
DLAIDGEEHD ECEDWTSKLG INLRNCVHAR NNSPSKQVPW ILGTLLYDKC LASKSLALNW  840
QSRRSRSKRS SCLAQTKPCD SIERKKEDRF YGRIDDSPAE KKLLQYSRRK FKSKQRCFPV  900
ASMVSEFQEK SKNLSATLNG DHNNCFSKTD LEAKNFRSDY ALSCVSASTK MSPIHPEIQI  960
AEMPASTRLN DAKPQPSNSI PDHTLMTEEV GAEIEKQTIQ ESDVDRNNDL TLGHSKMHCN  1020
TSVSEICGKE SQGCQDKKCS SSLTNATDRN IEMIRISEIT EAIIIDSRCN SLILNGEGHQ  1080
EYQSTCKSNN EEAALSPASL VNQSTLASVV GSFGSPNNNY TAEKISSPIF LEKTTEEEID  1140
SLSERDKEPL IDDRPISEHT LKEVCEVQRE LYASADLHNT IVLDYEMQHE TQGGKDSRKE  1200
INQSTLVSTI TRGEYAEGLN DEVIPKSVEQ CQIENMNKIN VEPVSSYVAK GENKCVTSSE  1260
LGCSEVLVET YPKDSCIQLI SDKEKETEIQ SVSIIDEEFC SGTDTSIDDS SSIQECSKIE  1320
KESCVTENIN GIKANLSKDN RELESCELTT AVPRSNARKN KKRKVKNTTK NQSNIDNFIR  1380
SPCEGLRPRA GKIATDKSGV EINQVDKENQ VAKRARRSSE GLVPHKNKKD DVKKPHKCDL  1440
DGCQMSFKTK AELLLHKRNL CPHEGCGKKF SSHKYALLHQ RVHDDERPLK CPWKGCSMSF  1500
KWAWARTEHI RVHTGEKPYH CKVEGCGLSF RFVSDFSRHR RKTGHHVKPP A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6a57_A2e-521436154823135Lysine-specific demethylase REF6
6a58_A2e-521436154823135Lysine-specific demethylase REF6
6a59_A2e-521436154823135Lysine-specific demethylase REF6
6ip0_A2e-50276490137346Transcription factor jumonji (Jmj) family protein
6ip4_A2e-50276490137346Arabidopsis JMJ13
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1843848RSRSKR
Functional Description ? help Back to Top
Source Description
UniProtActs probably as a histone 'Lys-4' (H3K4me) demethylase. Involved in transcriptional gene regulation. Acts as a repressor of the photoperiodic flowering pathway and of FT. Binds around the transcription start site of the FT locus. {ECO:0000269|PubMed:15377760, ECO:0000269|PubMed:18467490, ECO:0000269|PubMed:19946624}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN17151.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006589417.10.0probable lysine-specific demethylase ELF6
RefseqXP_028182376.10.0probable lysine-specific demethylase ELF6
SwissprotQ6BDA00.0ELF6_ARATH; Probable lysine-specific demethylase ELF6
TrEMBLA0A445IQE60.0A0A445IQE6_GLYSO; Putative lysine-specific demethylase ELF6 isoform B
STRINGGLYMA10G35350.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80313034
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04240.10.0C2H2 family protein
Publications ? help Back to Top
  1. Heidari B,Nemie-Feyissa D,Kangasjärvi S,Lillo C
    Antagonistic regulation of flowering time through distinct regulatory subunits of protein phosphatase 2A.
    PLoS ONE, 2013. 8(7): p. e67987
    [PMID:23976921]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  4. Crevillén P, et al.
    Epigenetic reprogramming that prevents transgenerational inheritance of the vernalized state.
    Nature, 2014. 515(7528): p. 587-90
    [PMID:25219852]
  5. Yang H,Howard M,Dean C
    Physical coupling of activation and derepression activities to maintain an active transcriptional state at FLC.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(33): p. 9369-74
    [PMID:27482092]