PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN17058.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 560aa    MW: 62793.8 Da    PI: 4.4481
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN17058.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM172.31.5e-53201462128
         NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 
                 +pGfrFhPtdeelv++yLk+k+ gk+l+l +vi+e+d+yk++P+dLp +  +k+++++w+fF++rd+ky++g r+nrat++gyWkatgkd++v++ +++
  KHN17058.1  20 MPGFRFHPTDEELVMYYLKRKICGKRLKL-DVIRETDVYKWDPEDLPgQsILKTGDRQWFFFCHRDRKYPNGGRSNRATRRGYWKATGKDRNVIC-NSR 116
                 69***************************.99**************96446788999**************************************.999 PP

         NAM  99 lvglkktLvfykgrapkgektdWvmheyrl 128
                  vg+kktLvfy grap+ge+tdWvmhey+l
  KHN17058.1 117 SVGVKKTLVFYAGRAPSGERTDWVMHEYTL 146
                 ****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.45E-6015169IPR003441NAC domain
PROSITE profilePS5100554.21919169IPR003441NAC domain
PfamPF023654.9E-2821146IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0070301Biological Processcellular response to hydrogen peroxide
GO:0005634Cellular Componentnucleus
GO:0005789Cellular Componentendoplasmic reticulum membrane
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 560 aa     Download sequence    Send to blast
MGEASGAGSA DCFSQMMSSM PGFRFHPTDE ELVMYYLKRK ICGKRLKLDV IRETDVYKWD  60
PEDLPGQSIL KTGDRQWFFF CHRDRKYPNG GRSNRATRRG YWKATGKDRN VICNSRSVGV  120
KKTLVFYAGR APSGERTDWV MHEYTLDEEE LKRCLGVKDY YALYKVYKKS GPGPKNGEQY  180
GAPFNEEQWA DDDIVDFNIN STDQEAPNDV DNGNVLQPLL DDEIDNIIRG ILDDELVLDQ  240
QHVNGYPDFP QVVSEETQST VVDQFSEAVM FPEPVRITQP SNQFFDAQPS FDFNQPVTSH  300
LHVSEVSEVT SASSIKAKEL DFNEDGFLEI NDLIDTEPIL ANMENPVEYQ QFEDGLSELD  360
LFQDAQMFLR DLGPIIHETD SHAYTNAFVS SNIESQSYQL LPNPEDANQT VGEFWMHGER  420
NTPSASEGFV DSFSLSSPGV VYESVGFPTE GNNNQSSTVE DVATSSFSSA LWAFVESIPT  480
TPASAAESAL VNRALNRMSS FSRLKIKHTN IAASGKDTGT MKRAGRKGLP FLFFSILIAL  540
CAFCWVFVGN LRLVGRSISP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-492114617140Stress-induced transcription factor NAC1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13746KRKICGKRLK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00179DAPTransfer from AT1G34190Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN17058.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF6573050.0KF657305.1 Glycine max NAC transcription factor (SNAC38) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028183803.10.0NAC domain-containing protein 17-like
TrEMBLA0A445IQY10.0A0A445IQY1_GLYSO; NAC domain-containing protein 17
STRINGGLYMA10G36360.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF61313451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34190.11e-134NAC domain containing protein 17
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]