PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN17019.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bZIP
Protein Properties Length: 95aa    MW: 11088.8 Da    PI: 10.0756
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN17019.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_151.71.9e-163180352
                XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1  3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleel 52
                + +r+rr++kNRe+A rsR+RK+a++ eLe  + +Le+eN++L ke e++
  KHN17019.1 31 AQQRQRRMIKNRESAARSRERKQAYQVELESLAVKLEEENDKLLKEKETI 80
                679*****************************************998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PRINTSPR000418.8E-52844IPR001630cAMP response element binding (CREB) protein
SMARTSM003381.4E-102995IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.5763181IPR004827Basic-leucine zipper domain
PfamPF001701.1E-143180IPR004827Basic-leucine zipper domain
CDDcd147073.80E-143385No hitNo description
SuperFamilySSF579596.88E-113379No hitNo description
Gene3DG3DSA:1.20.5.1703.6E-143481No hitNo description
PROSITE patternPS0003603651IPR004827Basic-leucine zipper domain
PRINTSPR000418.8E-54666IPR001630cAMP response element binding (CREB) protein
PRINTSPR000418.8E-56683IPR001630cAMP response element binding (CREB) protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 95 aa     Download sequence    Send to blast
MDDTSQCLLT KRLGNGTLFS FDHLPTLDKA AQQRQRRMIK NRESAARSRE RKQAYQVELE  60
SLAVKLEEEN DKLLKEKETI SFALCRTSKL KPFRC
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. {ECO:0000269|PubMed:8146148}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN17019.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028219753.13e-32G-box-binding factor 4-like isoform X1
SwissprotP427772e-21GBF4_ARATH; G-box-binding factor 4
TrEMBLA0A445IR924e-31A0A445IR92_GLYSO; G-box-binding factor 4 isoform B
STRINGGLYMA10G36820.21e-29(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20283481
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03970.19e-17G-box binding factor 4
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]