PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN17009.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family Trihelix
Protein Properties Length: 641aa    MW: 72411.1 Da    PI: 5.5343
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN17009.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix93.32.4e-2960143186
    trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                 rW++qe+laL+++r++m+  +r+++lk+plWeev++k++e g++rs+k+Ckek+en+ k++k++keg+++++  + +t+++fdql+
  KHN17009.1  60 RWPRQETLALLKIRSDMDVVFRDSSLKGPLWEEVARKLSELGYHRSAKKCKEKFENVYKYHKRTKEGRSGKH--EGKTYKFFDQLQ 143
                 8********************************************************************964..4457******98 PP
2trihelix1032.2e-32450535187
    trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                 rW+k ev+aLi++r+++e++++++  k+plWe++s+ m + g++rs+k+Ckekwen+nk++kk+ke++k+r  e+s+tcpyf++lea
  KHN17009.1 450 RWPKTEVHALIRLRTSLETKYQENGPKAPLWEDISAGMLRLGYNRSAKRCKEKWENINKYFKKVKESNKQR-REDSKTCPYFNELEA 535
                 8*********************************************************************8.78999*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.004557119IPR001005SANT/Myb domain
CDDcd122037.73E-2359124No hitNo description
PfamPF138377.3E-2059145No hitNo description
PROSITE profilePS500907.0559117IPR017877Myb-like domain
PROSITE profilePS500907.271443507IPR017877Myb-like domain
SMARTSM007170.091447509IPR001005SANT/Myb domain
PfamPF138374.5E-22449536No hitNo description
CDDcd122035.01E-26450514No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 641 aa     Download sequence    Send to blast
METSSGEAVA AHGGGEVIMM DANSGEEENN NHNNKGKLEE GGGEEEEGDN KINNSCGGNR  60
WPRQETLALL KIRSDMDVVF RDSSLKGPLW EEVARKLSEL GYHRSAKKCK EKFENVYKYH  120
KRTKEGRSGK HEGKTYKFFD QLQALENQFT VSSYSPKPQP TLATATTTTN TITLPPPTRP  180
SAITPISYVT TTVPSTNPTI ISPSPPQPPT NATTTTTITS PTVVTNPRNP PQPNNNNNSN  240
NIPYSLPNMN NLFSTTSTSS STASDEDLEE KYRKKRKWKD YFRRLTRQVL AKQEEMQKRF  300
LEAIDNRERE QVAQQEAWRI QEMARINREH ELLVQERSTA AAKNAAVIAF LQQLSGQHQN  360
STTQANFPQQ PPPQKVTIVQ PPPQQAPQPQ APLVLSNSDN MEIQKMNNGH SVVTATVTAT  420
ATPTPTTTFV AAATAITTTP SSLSSLSSSR WPKTEVHALI RLRTSLETKY QENGPKAPLW  480
EDISAGMLRL GYNRSAKRCK EKWENINKYF KKVKESNKQR REDSKTCPYF NELEALYKEK  540
SKTQNPFGAS FHNMKPHEMM EPLMVQPEQQ WRPPSQYEQG AAKENNNNER KEREEEEEDE  600
EEEEEEEEDE NEEGDLESVE DEGGNRYEIA TNKLSSVDTV E
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN17009.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028183802.10.0trihelix transcription factor GT-2-like
TrEMBLA0A445IRF10.0A0A445IRF1_GLYSO; Trihelix transcription factor GT-2 isoform A
STRINGGLYMA20G30650.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37334181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.21e-75Trihelix family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]