PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN16851.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family SBP
Protein Properties Length: 422aa    MW: 46096.6 Da    PI: 8.9888
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN16851.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP1314.2e-41124200278
                 -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
         SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                 C v+gC++dls++++yhrrhkvCevhsk+++v++ g++qrfCqqCsrfh+l+efDe+krsCr+rL++hn+rrrk+q+
  KHN16851.1 124 CLVDGCHSDLSNCRDYHRRHKVCEVHSKTAQVTIGGQKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQP 200
                 **************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.6E-33117185IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.804121198IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.75E-38122203IPR004333Transcription factor, SBP-box
PfamPF031103.7E-30124197IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MQLIRGPSWC GIQKGEQRKT EKVQVFMDWN LKAPSWDLSE VDQANLPNME TMEGSSRYGM  60
YRTKGEFSVD LKLGQVGNSG TESSVLTKSK DGGAVGVSKM ISSSSSGSAK RARSLSNGTQ  120
TVSCLVDGCH SDLSNCRDYH RRHKVCEVHS KTAQVTIGGQ KQRFCQQCSR FHSLEEFDEG  180
KRSCRKRLDG HNRRRRKPQP EVVLTRSASF LSNYHQGTQL LSFSSSHVYP STTVVNPTLG  240
GVLTSGDVRL HGQNHLHHQM HLVDKQDLFL GSSPTGYKEG KHLAFMQGDH TLNNQSPHLP  300
GASVGPAQMF LRTSPYSESG GLRCKMFCDS LTGSAHGNTS RALSLLSSPP QPHSPGNGLN  360
QMVNPHSPLM QPLGLSLHDN SLGSVDPVLG PNGSDHSSSM HHIGSNGSQV NEAPPLFPFQ  420
WE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A4e-281241971184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1180197KRSCRKRLDGHNRRRRKP
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN16851.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028247113.10.0squamosa promoter-binding-like protein 13A isoform X1
TrEMBLA0A445J8690.0A0A445J869_GLYSO; Squamosa promoter-binding-like protein 13B isoform A
STRINGGLYMA08G01450.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25913378
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.11e-68SBP family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]