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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN16638.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 177aa MW: 19956.9 Da PI: 9.0913 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 68.9 | 4.9e-22 | 12 | 57 | 4 | 49 |
-SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 +++ +qvtfskRr+g++KKA+ELS+LC+aevav++fs+ ++ y + KHN16638.1 12 KDSNTKQVTFSKRRTGLFKKANELSILCGAEVAVVVFSPGNNPYSF 57 678889********************************99887766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 24.936 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 4.1E-31 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.14E-26 | 1 | 74 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.5E-19 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.2E-24 | 12 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.5E-19 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.5E-19 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 177 aa Download sequence Send to blast |
MVRRKIEITE LKDSNTKQVT FSKRRTGLFK KANELSILCG AEVAVVVFSP GNNPYSFGHP 60 SVDVVADKFL KQEPKSNDVQ GTSTEVADMD RLNQQLSDVQ NEILEEQKKA AELNERMKQK 120 GVTQLFQPKE LQGSNLEIQK MKDCYDAIEV SEYMLLLAKE PVVGIPKQVA TKKRRGN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6bz1_A | 2e-15 | 1 | 79 | 1 | 83 | MEF2 CHIMERA |
6bz1_B | 2e-15 | 1 | 79 | 1 | 83 | MEF2 CHIMERA |
6bz1_C | 2e-15 | 1 | 79 | 1 | 83 | MEF2 CHIMERA |
6bz1_D | 2e-15 | 1 | 79 | 1 | 83 | MEF2 CHIMERA |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN16638.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 2e-77 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028243636.1 | 1e-128 | agamous-like MADS-box protein AGL29 | ||||
TrEMBL | A0A445J9C0 | 1e-111 | A0A445J9C0_GLYSO; Agamous-like MADS-box protein AGL29 | ||||
TrEMBL | I1KPX3 | 1e-113 | I1KPX3_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA08G03830.1 | 1e-118 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2424 | 29 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G66656.1 | 4e-32 | AGAMOUS-like 91 |
Publications ? help Back to Top | |||
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