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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN16438.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | NAC | ||||||||
Protein Properties | Length: 215aa MW: 24339.4 Da PI: 5.1836 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 88.6 | 1.1e-27 | 14 | 140 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekew..yfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 lp+G+rF+P+de l +yL+k++ +++l+ + i+++d+y++ Pw+Lp ++ +w +fF+ +++ ++ ++r + +g W++ + ++v +++ KHN16438.1 14 LPVGYRFDPSDEILAGYYLRKRIMAQPLPN-DLIQDCDVYQTVPWELPGGG-NKYLNWqrFFFHDLRTRVF-DNLNKREAGNGQWRTIEEAQDVELSND 109 799*************************99.99***************432.2233555488888877765.5677888899***************** PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128 ++v +++L+f++++ + k++W+mhe+rl KHN16438.1 110 QVVAKRNVLAFWEAKGNGFAKSNWLMHEFRL 140 *************999999**********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.09E-31 | 11 | 160 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 32.632 | 14 | 160 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.3E-14 | 15 | 140 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MEVLNPIEGK TYKLPVGYRF DPSDEILAGY YLRKRIMAQP LPNDLIQDCD VYQTVPWELP 60 GGGNKYLNWQ RFFFHDLRTR VFDNLNKREA GNGQWRTIEE AQDVELSNDQ VVAKRNVLAF 120 WEAKGNGFAK SNWLMHEFRL VSKSLPSMVS SVAVYRIFEK KEGRKGKKAK GSEGETSSSS 180 SSEEEVMDEA PIVIDFTMES CIGTGPPSPA TSENS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 3e-15 | 14 | 140 | 15 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN16438.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT094887 | 0.0 | BT094887.1 Soybean clone JCVI-FLGm-6I22 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028217397.1 | 1e-161 | NAC domain-containing protein 83-like | ||||
TrEMBL | A0A0B2Q8T5 | 1e-159 | A0A0B2Q8T5_GLYSO; NAC domain-containing protein 2 | ||||
STRING | GLYMA19G26950.1 | 1e-159 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13413 | 11 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13180.1 | 6e-22 | NAC domain containing protein 83 |
Publications ? help Back to Top | |||
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