PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN16189.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family Trihelix
Protein Properties Length: 581aa    MW: 67074.6 Da    PI: 6.7706
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN16189.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix55.81.2e-1797175286
    trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                 Wt +evl+L+++r++me+++ +       We+vs+k++e g++rs+++Ckek+e+ ++++ +  + +k++ ++s+s+++++++le
  KHN16189.1  97 WTTDEVLTLLRIRSSMESWFPEL-----TWEHVSRKLAELGYKRSAEKCKEKFEEESRYFNNNINYAKNN-NNSTSNYRFLSELE 175
                 ********************987.....9*********************************99999986.78888******998 PP
2trihelix90.32e-28428517186
    trihelix   1 rWtkqevlaLiearr.....emeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                 rW+k+evlaLi++r      + +++ ++g+ k plWe++s+ m+e  ++rs+k+Ckekwen+nk+++k+k++ kkr s +s+tcpyf+ql 
  KHN16189.1 428 RWPKDEVLALINLRCtsvnnNNNNEEKEGNNKVPLWERISQGMSELRYKRSAKRCKEKWENINKYFRKTKDITKKR-SLDSRTCPYFHQLS 517
                 8*************8544434444444688*********************************************8.9999********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138375.2E-1295176No hitNo description
PROSITE profilePS500906.34296148IPR017877Myb-like domain
PfamPF138371.1E-18427518No hitNo description
CDDcd122039.39E-20427497No hitNo description
PROSITE profilePS500906.237428490IPR017877Myb-like domain
Sequence ? help Back to Top
Protein Sequence    Length: 581 aa     Download sequence    Send to blast
MFDGVPDQFH QFITPRTSQP LHLPFPLHAS GTPNTTFPSN FDPYNNPSHQ LPLQPNNLLH  60
PLHHKDEEKE ENTTTVPMNF EIQRDQRQQL PELIDPWTTD EVLTLLRIRS SMESWFPELT  120
WEHVSRKLAE LGYKRSAEKC KEKFEEESRY FNNNINYAKN NNNSTSNYRF LSELEQLYHQ  180
QGSSGDHLEK MTQPPLQKQG RMDHHALELE EEEGDSRNVI VDASVTKIQS DEALAVEKIT  240
KDRKRKRSDR FEMFKGFCES IVHKMMTQQE EMHNKLLEDM MKRDEEKFTR EEAWKKQEME  300
KMNKELEMMA REQAVAGDRQ AKIIQILNKF SATTSSPASH TLKKVNTHIS QNPNPSQTEN  360
PTLSVAQDTL IPSTSSTSTP APAPPQNPSS CSLNSQNNNH INNNIPVEKN SILNKGSSSN  420
EKDDVGRRWP KDEVLALINL RCTSVNNNNN NEEKEGNNKV PLWERISQGM SELRYKRSAK  480
RCKEKWENIN KYFRKTKDIT KKRSLDSRTC PYFHQLSSLY NQGKLVLQSE SHLNNTPPDQ  540
NPEQVKPDQT TQAHESSSQV GSGSGFSVQQ QQVPSLDFDQ F
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN16189.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF2217540.0EF221754.1 Glycine max trihelix transcription factor (GT-2B) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028185826.10.0trihelix transcription factor GTL2-like
TrEMBLA0A445INB60.0A0A445INB6_GLYSO; Trihelix transcription factor GTL2
TrEMBLI1LBK50.0I1LBK5_SOYBN; Uncharacterized protein
STRINGGLYMA10G30300.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50433355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28300.11e-81Trihelix family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]