PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN16145.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | bHLH | ||||||||
Protein Properties | Length: 321aa MW: 35480.6 Da PI: 5.438 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 38.7 | 1.8e-12 | 119 | 170 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h +Er+RR+++N+ ++ Lr+l+P + + ++ + a+i Av+++k+L+ KHN16145.1 119 QRMTHIVVERNRRKQMNEYLSVLRSLMPDS---YIQRGDQASIIGGAVNFVKELE 170 79****************************...9******************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 1.1E-13 | 117 | 174 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.07E-13 | 117 | 174 | No hit | No description |
PROSITE profile | PS50888 | 15.243 | 118 | 169 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.7E-15 | 118 | 181 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.7E-9 | 119 | 170 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 9.0E-9 | 124 | 175 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 321 aa Download sequence Send to blast |
MALEAVVFPQ SQDPFGSGYG SVNTKDFYNY TLLAATYEQQ HINKEEEQGG ASISTFQPET 60 SNYPYGDWTT SSSSSMLPHL NNELQETTTT SSNTLDSLNT RPKRRRAKSR KNKEEIENQR 120 MTHIVVERNR RKQMNEYLSV LRSLMPDSYI QRGDQASIIG GAVNFVKELE QRLHFLGAQK 180 EGEGKSDDGG ATNMPFSEFF TFPQYSTGGG GGGGSDNSAA IGEDVSEVKC GIADIEVTMV 240 ESHANLKIRS KKCPKQLLKL VSGLHTVRLT ILHLNVTTTG EVVLYSLSVK VEDDCKLGSV 300 DDIAAAVYQM LDRIQQEAML N |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 119 | 130 | RMTHIVVERNRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN16145.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT093468 | 0.0 | BT093468.1 Soybean clone JCVI-FLGm-14K7 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028183377.1 | 0.0 | transcription factor bHLH94-like | ||||
Swissprot | Q9C7T4 | 4e-78 | BH096_ARATH; Transcription factor bHLH96 | ||||
TrEMBL | A0A445IN17 | 0.0 | A0A445IN17_GLYSO; Transcription factor bHLH96 | ||||
STRING | GLYMA10G29760.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF718 | 34 | 135 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72210.1 | 4e-79 | bHLH family protein |
Publications ? help Back to Top | |||
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