PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN16059.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | TALE | ||||||||
Protein Properties | Length: 290aa MW: 32874.1 Da PI: 4.855 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 30.4 | 6.5e-10 | 233 | 266 | 22 | 55 |
SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 22 nrypsaeereeLAkklgLterqVkvWFqNrRake 55 +yp++ee+ +L++ +gL+++q+ +WF N+R ++ KHN16059.1 233 WPYPTEEEKVQLSEMTGLDQKQINNWFINQRKRH 266 59*****************************885 PP | |||||||
2 | ELK | 36.7 | 9.3e-13 | 186 | 207 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK++LlrKY+gyL+sLk+EF+ KHN16059.1 186 ELKEMLLRKYGGYLSSLKKEFL 207 9********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 1.2E-19 | 43 | 87 | IPR005540 | KNOX1 |
Pfam | PF03790 | 4.7E-20 | 45 | 85 | IPR005540 | KNOX1 |
SMART | SM01256 | 2.2E-25 | 90 | 141 | IPR005541 | KNOX2 |
Pfam | PF03791 | 8.9E-24 | 93 | 140 | IPR005541 | KNOX2 |
Pfam | PF03789 | 9.6E-10 | 186 | 207 | IPR005539 | ELK domain |
SMART | SM01188 | 8.8E-7 | 186 | 207 | IPR005539 | ELK domain |
PROSITE profile | PS51213 | 11.174 | 186 | 206 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 12.746 | 206 | 269 | IPR001356 | Homeobox domain |
SMART | SM00389 | 7.3E-14 | 208 | 273 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.61E-20 | 208 | 282 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.2E-27 | 211 | 271 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 3.05E-13 | 218 | 270 | No hit | No description |
Pfam | PF05920 | 2.3E-17 | 226 | 265 | IPR008422 | Homeobox KN domain |
PROSITE pattern | PS00027 | 0 | 244 | 267 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 290 aa Download sequence Send to blast |
MNPLLSCSGG DVVREVNVNS ATGASELNLG LVANNFFSDI SDRFIKSQIA THPLYPNLVS 60 AYIECRKVGA PPELASLLEE IARESYPTDA LREIGDDPEL DEFMESYCEV LHRYKQELSK 120 PFNEATLFLC SIESQLSNLC KGTLTMPLDN NHSDEAAGTS EDELSWEKVE AVEGHESSGP 180 RPGDQELKEM LLRKYGGYLS SLKKEFLKKR KKGKLPKDAR MVLMDWWNTH YRWPYPTEEE 240 KVQLSEMTGL DQKQINNWFI NQRKRHWKPS EDMRFAIMDG VSGSGFGGPI |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 201 | 210 | LKKEFLKKRK |
2 | 207 | 211 | KKRKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in shoot formation during early embryogenesis. {ECO:0000269|PubMed:10488233}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN16059.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT094097 | 0.0 | BT094097.1 Soybean clone JCVI-FLGm-18M11 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003536044.1 | 0.0 | homeobox protein knotted-1-like 10 isoform X1 | ||||
Refseq | XP_028183426.1 | 0.0 | homeobox protein knotted-1-like 10 isoform X1 | ||||
Swissprot | Q9FP29 | 8e-97 | KNOS1_ORYSJ; Homeobox protein knotted-1-like 1 | ||||
TrEMBL | A0A445IMI6 | 0.0 | A0A445IMI6_GLYSO; Homeobox protein knotted-1-like 1 isoform A | ||||
TrEMBL | K7LJG7 | 0.0 | K7LJG7_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA10G28820.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF620 | 34 | 125 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G23380.1 | 6e-84 | KNOTTED1-like homeobox gene 6 |
Publications ? help Back to Top | |||
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