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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN15891.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | NAC | ||||||||
Protein Properties | Length: 441aa MW: 49184.3 Da PI: 6.8274 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 168.7 | 1.9e-52 | 15 | 143 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 +ppGfrFhPt+eel+++yL+kkv+ +k++l +vi++vd++k+ePwd+++k+k +++wyfFs++dkky+tg+r+nrat++g+Wkatg+dk ++s + KHN15891.1 15 VPPGFRFHPTEEELLQYYLRKKVSYEKIDL-DVIRDVDLNKLEPWDIQEKCKIgttPQNDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKVIYS-N 111 69****************************.9***************964444222455**************************************.9 PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrl 128 g+ +g++ktLvfykgrap+g+k+dW+mheyrl KHN15891.1 112 GKRIGMRKTLVFYKGRAPHGQKSDWIMHEYRL 143 99****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.62E-59 | 9 | 175 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.37 | 15 | 175 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.7E-27 | 16 | 143 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 441 aa Download sequence Send to blast |
MPENMSISVN GQSQVPPGFR FHPTEEELLQ YYLRKKVSYE KIDLDVIRDV DLNKLEPWDI 60 QEKCKIGTTP QNDWYFFSHK DKKYPTGTRT NRATAAGFWK ATGRDKVIYS NGKRIGMRKT 120 LVFYKGRAPH GQKSDWIMHE YRLDDNNTSD TNIVSNVMAD AAQEEGWVVC RIFKKKNHLK 180 TLDSPIASGE GRRSHMFDSC DEGALEQILQ QMGRGCKEES SYEGNYNSYG RFAMGLNNGG 240 GGGYNDRFMK LPSLESPKSA SMENHHNTNN NCNNNMKSNN NNNNNNNGYH PIIPVEMGTD 300 NEGTFTTHQV SGGDPNNNNS NIVHPLEVGS GGGGLTNWAA LDRLVASQLN GQTDASRQLG 360 CAFNDPTMYC TSVDHHDLHH QIPTLRSSST SANTRPSPAP AFINPPTQDF TSEIDLWNFS 420 RSTSSLLASS EPLCHVSNTS V |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-48 | 9 | 178 | 9 | 171 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator of genes involved in biosynthesis of secondary walls. Together with NST2 and NST3, required for the secondary cell wall thickening of sclerenchymatous fibers, secondary xylem (tracheary elements), and of the anther endocethium, which is necessary for anther dehiscence. May also regulate the secondary cell wall lignification of other tissues. {ECO:0000269|PubMed:16214898, ECO:0000269|PubMed:17237351, ECO:0000269|PubMed:17333250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN15891.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ173522 | 0.0 | KJ173522.1 Glycine max NAC domain transcription factor (SHAT1-5) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028205825.1 | 0.0 | NAC domain-containing protein 43-like | ||||
Swissprot | Q84WP6 | 1e-136 | NAC43_ARATH; NAC domain-containing protein 43 | ||||
TrEMBL | A0A445GD34 | 0.0 | A0A445GD34_GLYSO; NAC domain-containing protein 43 | ||||
STRING | GLYMA16G02200.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3031 | 33 | 74 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46770.1 | 1e-122 | NAC family protein |