PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN15800.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HD-ZIP
Protein Properties Length: 729aa    MW: 80117.8 Da    PI: 6.7115
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN15800.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.26.8e-1946101156
                 TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 rr+ t++t++q+ e+e++F+ +++p++++r+ L ++lgL+  q+k+WFqN+R++ k
  KHN15800.1  46 RRRHTRHTHHQISEMESFFKGCPHPDEKQRKALGRELGLEPLQIKFWFQNKRTQVK 101
                 7999************************************************9877 PP
2START165.24.7e-522544686206
                 HHHHHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECTT.... CS
       START   6 aaqelvkkalaeepgWvkss...esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevissg.... 88 
                 a +e +++ l+++p+Wv      e  n+de+l+ f+++ +      ++e +r +++v+m +++lve l+d++ qW++++     +a t+ev+s+g    
  KHN15800.1 254 AIEEINRLSLSGDPLWVPGNygsEVVNEDEYLRVFPRGIGptllgARTESSRQTAIVIMHHMKLVEMLMDVN-QWSNMFCgivsRAVTHEVLSTGetir 351
                 567788889999*****988888889***********999********************************.******999***************** PP

                 ..EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHH CS
       START  89 ..galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrsl 184
                   ga q+m+ae+q++splvp Rd +f+R+++++++ +w++vd S d+ ++        + +++pSg++i++++ng+skv+wvehv+++++ +h+l++ l
  KHN15800.1 352 ydGACQVMSAEFQVPSPLVPtRDNYFIRFCKKHQGQSWAVVDFSMDHLRPGAI----TKIRRRPSGCIIQELPNGYSKVIWVEHVEVDDSEVHNLYKNL 446
                 **************************************************985....44448************************************* PP

                 HHHHHHHHHHHHHHHTXXXXXX CS
       START 185 vksglaegaktwvatlqrqcek 206
                 v s+la+gak+wva+ +r ce+
  KHN15800.1 447 VDSTLAFGAKRWVAAIDRTCER 468
                 ********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.1E-193197IPR009057Homeodomain-like
SuperFamilySSF466896.27E-1841109IPR009057Homeodomain-like
PROSITE profilePS5007116.24443103IPR001356Homeobox domain
SMARTSM003893.8E-1745107IPR001356Homeobox domain
PfamPF000461.7E-1646101IPR001356Homeobox domain
CDDcd000862.94E-1356104No hitNo description
PROSITE profilePS5084834.331240471IPR002913START domain
CDDcd088756.18E-96244467No hitNo description
SMARTSM002342.6E-42249468IPR002913START domain
PfamPF018521.2E-43255468IPR002913START domain
SuperFamilySSF559616.87E-26303470No hitNo description
Gene3DG3DSA:3.30.530.202.3E-4352462IPR023393START-like domain
SuperFamilySSF559612.88E-21489720No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 729 aa     Download sequence    Send to blast
MSLQRTSSEN NSGRNREEQE PSNKETTMEA PASGDDDQDL EEGFKRRRHT RHTHHQISEM  60
ESFFKGCPHP DEKQRKALGR ELGLEPLQIK FWFQNKRTQV KTQQERYENN LLRVENDKLR  120
AENRRYRNAL ANALCPSCGG PTALGEMSFD EQQLRIENAR LKEEIASMSG PAAKHAGKSG  180
SNSYCNMPSQ NQMPSRSLDL GVGNNNKNNN YVAVAQAQPA AMVGEIYGGN DPLRELPLFS  240
CFDKTLIGEI GLVAIEEINR LSLSGDPLWV PGNYGSEVVN EDEYLRVFPR GIGPTLLGAR  300
TESSRQTAIV IMHHMKLVEM LMDVNQWSNM FCGIVSRAVT HEVLSTGETI RYDGACQVMS  360
AEFQVPSPLV PTRDNYFIRF CKKHQGQSWA VVDFSMDHLR PGAITKIRRR PSGCIIQELP  420
NGYSKVIWVE HVEVDDSEVH NLYKNLVDST LAFGAKRWVA AIDRTCERLA SAMATNIPQG  480
ALCVITSHES RKSMMKLAER MVLSFCTGVG ASTANAWTPL PSGLEDVRVM TRKSVDDPGR  540
PPGIVLSAAT SLWLPVPARR VFEFLRSENT RNQWDILSTG AQVNELAHIA NGRDHGNCVS  600
LLRVNTQNVG QNNMLILQES FIDATGSFVI YAPIDVAAIN VVLGGGNPDY VALLPSGFAV  660
LPDGPGLNGG PGPICEAGSG GGCLLTVAFQ ILVDSAPTSK ISVGSVTTVN SLIKRTVEKI  720
RDAVSLDGN
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in cell specification and pattern formation during embryogenesis. Binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to PDF2. {ECO:0000269|PubMed:11439135, ECO:0000269|PubMed:12505995}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN15800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028220715.10.0homeobox-leucine zipper protein MERISTEM L1-like
SwissprotQ8RWU40.0ATML1_ARATH; Homeobox-leucine zipper protein MERISTEM L1
TrEMBLA0A445F4Y00.0A0A445F4Y0_GLYSO; Homeobox-leucine zipper protein MERISTEM L1 isoform A
STRINGGLYMA20G28010.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2237224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21750.20.0HD-ZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Takada S,Takada N,Yoshida A
    Induction of epidermal cell fate in Arabidopsis shoots.
    Plant Signal Behav, 2013. 8(11): p. e26236
    [PMID:23989220]
  3. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  4. Liang Z,Brown RC,Fletcher JC,Opsahl-Sorteberg HG
    Calpain-Mediated Positional Information Directs Cell Wall Orientation to Sustain Plant Stem Cell Activity, Growth and Development.
    Plant Cell Physiol., 2015. 56(9): p. 1855-66
    [PMID:26220906]
  5. Katagiri Y, et al.
    The coordination of ploidy and cell size differs between cell layers in leaves.
    Development, 2016. 143(7): p. 1120-5
    [PMID:26903507]
  6. Seeliger I, et al.
    The AP2-type transcription factors DORNRÖSCHEN and DORNRÖSCHEN-LIKE promote G1/S transition.
    Mol. Genet. Genomics, 2016. 291(5): p. 1835-49
    [PMID:27277595]
  7. Schwarz EM,Roeder AH
    Transcriptomic Effects of the Cell Cycle Regulator LGO in Arabidopsis Sepals.
    Front Plant Sci, 2016. 7: p. 1744
    [PMID:27920789]
  8. Meyer HM, et al.
    Fluctuations of the transcription factor ATML1 generate the pattern of giant cells in the Arabidopsis sepal.
    Elife, 2018.
    [PMID:28145865]