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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
KHN15694.1 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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| Family |
MIKC_MADS |
| Protein Properties |
Length: 230aa MW: 26573.2 Da PI: 9.3146 |
| Description |
MIKC_MADS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| KHN15694.1 | genome | TCUHK | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 93.6 | 9.5e-30 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
+ri+nk+nrqvtfskRrng+lKKA+ELSvLCdae+a+iifss+gkl+ yss
KHN15694.1 9 ERIQNKINRQVTFSKRRNGLLKKAFELSVLCDAEIALIIFSSRGKLFQYSS 59
69***********************************************96 PP
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| 2 | K-box | 65.2 | 2.3e-22 | 80 | 171 | 7 | 97 |
K-box 7 ks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97
+ +e++ ++ l+qel L+ + e+Lqr+qR+llGe+Le+Ls+keL++Le+qL++ l + R++ ++ l++ i+el k ++l++ nk L+++
KHN15694.1 80 GDvTEHQSEQCLYQELLILRVKHESLQRTQRNLLGEELEPLSMKELHSLEKQLDRTLGQARKHLTQKLISRIDELHGKVHNLEQVNKHLESQ 171
3347788899*******************************************************************************986 PP
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| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| SMART | SM00432 | 8.9E-39 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
| PROSITE profile | PS50066 | 31.385 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
| CDD | cd00265 | 1.25E-39 | 2 | 72 | No hit | No description |
| SuperFamily | SSF55455 | 1.12E-31 | 2 | 74 | IPR002100 | Transcription factor, MADS-box |
| PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 2.3E-30 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF00319 | 4.1E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 2.3E-30 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 2.3E-30 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF01486 | 4.8E-19 | 83 | 170 | IPR002487 | Transcription factor, K-box |
| PROSITE profile | PS51297 | 13.507 | 88 | 182 | IPR002487 | Transcription factor, K-box |
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 230 aa
Download sequence Send
to blast |
MGRGKVVLER IQNKINRQVT FSKRRNGLLK KAFELSVLCD AEIALIIFSS RGKLFQYSST 60
DINRIIDKYR QCCFNMSQTG DVTEHQSEQC LYQELLILRV KHESLQRTQR NLLGEELEPL 120
SMKELHSLEK QLDRTLGQAR KHLTQKLISR IDELHGKVHN LEQVNKHLES QERGKCTQTC 180
EGSANSHIRL QDAQVNQFES ETTGSFRLQQ EQTTASKGKE SSHNINILRL
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| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor. Plays minor but redundant roles with MADS6 in floral development. {ECO:0000269|PubMed:19820190}. |
| Publications
? help Back to Top |
- Duan Y, et al.
Characterization of Osmads6-5, a null allele, reveals that OsMADS6 is a critical regulator for early flower development in rice (Oryza sativa L.).
Plant Mol. Biol., 2012. 80(4-5): p. 429-42
[PMID:22933119] - Qi X, et al.
Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
Nat Commun, 2014. 5: p. 4340
[PMID:25004933] - Hu Y, et al.
Interactions of OsMADS1 with Floral Homeotic Genes in Rice Flower Development.
Mol Plant, 2015. 8(9): p. 1366-84
[PMID:25917758] - Bai X, et al.
Regulatory role of FZP in the determination of panicle branching and spikelet formation in rice.
Sci Rep, 2016. 6: p. 19022
[PMID:26744119]
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