PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN15592.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 467aa    MW: 50891.6 Da    PI: 8.0873
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN15592.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY78.11e-24165221259
                 --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 +DgynWrKYGqK+vk+   +rsYY+Ct+++C++kk ++ +++ ++v+ei+Y+++Hnh+
  KHN15592.1 165 SDGYNWRKYGQKQVKNPMGSRSYYKCTHSNCCAKK-IKFCDHSGHVIEIVYKSQHNHD 221
                 7********************************98.999999***************7 PP
2WRKY91.28e-29330386359
                 -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 Dgy+WrKYGqK vkg+++ r+YYrCts+gCpv+k++e++ ++ k+++itY+g H+h+
  KHN15592.1 330 DGYRWRKYGQKLVKGNPHFRNYYRCTSSGCPVRKHIETAVDNSKALIITYKGVHDHD 386
                 9*******************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081118.085159223IPR003657WRKY domain
Gene3DG3DSA:2.20.25.807.4E-22161223IPR003657WRKY domain
SuperFamilySSF1182901.96E-20163223IPR003657WRKY domain
SMARTSM007741.2E-24164222IPR003657WRKY domain
PfamPF031061.3E-17166221IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.7E-30313388IPR003657WRKY domain
SuperFamilySSF1182909.15E-26322388IPR003657WRKY domain
PROSITE profilePS5081130.618323388IPR003657WRKY domain
SMARTSM007743.5E-32328387IPR003657WRKY domain
PfamPF031061.2E-22330385IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MQCTVMEEDE ETQQRVTDSS LSTESRTSTP SDGAPPNSET LVHRSSLPHD LATHMQGSST  60
AHKGGKAESK VSAQPPDEET IEKDAVEAPQ KQTENQLQSV CSTSLSELSP TSVSHSLSSA  120
LSPTVSQQRP SPPKANSVQV SKGDKGTPSD GTTLSSVSAV RASASDGYNW RKYGQKQVKN  180
PMGSRSYYKC THSNCCAKKI KFCDHSGHVI EIVYKSQHNH DPPHKIDTTK ESKLLPSSEP  240
KEESSVPKQS TKVLNNSDPS SSPKEPLQEA PCNGDKNLEN SSNVENGKII LKEKHVNDRE  300
PKRRQVASVK HGKKPKFVVH ATEDVGISGD GYRWRKYGQK LVKGNPHFRN YYRCTSSGCP  360
VRKHIETAVD NSKALIITYK GVHDHDMPVP KKRHGPPSAS LVAAAAPASM NNVQFKKTGL  420
LQSQETEAQC SEDTEGELMG EAMDLEGEKA IESARTLLSI GFEIKPC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A6e-25316388274WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN15592.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0312380.0KT031238.1 Glycine max clone HN_CCL_32 WRKY transcription factor (Glyma12g23950.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001304517.10.0WRKY transcription factor 44
RefseqXP_028194618.10.0probable WRKY transcription factor 32 isoform X1
SwissprotP595831e-109WRK32_ARATH; Probable WRKY transcription factor 32
TrEMBLA0A0B2Q7010.0A0A0B2Q701_GLYSO; Putative WRKY transcription factor 32
STRINGGLYMA12G23950.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51983456
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30935.11e-95WRKY DNA-binding protein 32
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]